This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LNCF.1

Display Name: USA/LOC_000LNCF.1/2017-08-07
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2017-08-07
Collection date (lower bound)
2017-08-07
Collection date (upper bound)
2017-08-07
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
WP69L-8-7-Cxr

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex restuans

Alignment and QC metrics

Length
10751
Total SNPs
65
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
97.48%
Total stop codons
0

Submission details

Submission ID
OZ201779.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:42:59 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T513A
  • G550T
  • T609C
  • A630G
  • C631T
  • C816T
  • G931A
  • T1442C
  • C1465T
  • C1629T
  • T1990G
  • C2466T
  • T2475C
  • T2940C
  • T3030C
  • G3213A
  • C3654T
  • C3693T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS4B

  • NS4B:I240M

    • NS5

  • NS5:T50N
  • NS5:R422K

    • env

  • env:V159A
  • env:L167F
  • env:S342A

    • prM

  • prM:A29S
  • prM:V156I
    • Deletions
    None
    Insertions
    None

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