This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LNAK.1

USA/SM62G-8-18-Cxp/2016-08-18
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2016-08-18
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
SM62G-8-18-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-26 14:51insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201795.1
Submitting group
Date submitted
2026-03-26 14:51:32 UTC
Date released
2026-03-26 15:20:32 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
21
Total ambiguous nucs
126
Length
10917 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T1442C
  • C1465T
  • C2466T
  • C4107T
  • A4146G
  • C4749T
  • C4803T
  • G5280A
  • C6138T
  • A6204G
  • T6312C
  • T6405C
  • C6426T
  • C6996T
  • T7938C
  • C8565T
  • C9352T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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