This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LNAK.1

Display Name: USA/LOC_000LNAK.1/2015-07-21
C. Aroh, M. D'Anton, C. Liang, P. Raj, B. Wakeland, N. Yan & E. Wakeland

Sample details

Collection date
2015-07-21
Collection date (lower bound)
2015-07-21
Collection date (upper bound)
2015-07-21
Earliest release date
2018-12-31
Collection country
USA
Collection subdivision level 1
Fort Bend Co. TX
Isolate name
AVA1503924

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UT Southwestern Medical Center, Department of Immunology

INSDC

NCBI release date
2018-12-31
NCBI update date
2018-12-31
INSDC accession

Host

Host taxon id
Host name scientific
Culex quinquefasciatus

Alignment and QC metrics

Length
11031
Total SNPs
57
Total inserted nucs
2
Total deleted nucs
0
Total ambiguous nucs
6
Total unknown nucs
0
Total frame shifts
1
Frame shifts
prM:98-167(nt:757-966)
Completeness
99.95%
Total stop codons
0

Submission details

Submission ID
MF175867.1
Submitting group
Date submitted
2025-10-13 08:43:05 UTC
Date released
2025-10-13 08:58:03 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A53G
  • C435T
  • A507G
  • A630G
  • G1117A
  • A1361G
  • T1442C
  • C1465T
  • C1560T
  • C3702G
  • G3768T
  • T3993C
  • T4101C
  • C4107T
  • A4146G
  • C4470T
  • C4548T
  • C4563T
    • Deletions
    None
    Insertions
    ins_756:C, ins_762:A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:I59M

    • NS3

  • NS3:E180D
  • NS3:V384I
  • NS3:I435L

    • NS4B

  • NS4B:I240M

    • env

  • env:A51T
  • env:K132R
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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