This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LN9M.1

USA/SO87L-8-28-Cme/2018-08-28
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-08-28
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
SO87L-8-28-Cme

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-27 21:39insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201794.1
Submitting group
Date submitted
2026-03-27 21:39:00 UTC
Date released
2026-03-27 22:10:13 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
93
Total ambiguous nucs
2
Length
10917 (99%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I113T
  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y
  • NS2B:A103V
  • NS3:A177S
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K177R
  • NS5:R422K
  • env:K93R
  • env:T126I
  • env:I159A
  • env:Q391H
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C55T
  • A459G
  • C594T
  • A630G
  • C1275T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • C1626T
  • T1965C
  • A2097C
  • A2139C
  • T2295C
  • C2371T
  • C2466T
  • C2593T
  • T2807C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I113T

NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y

NS3

  • NS3:A177S
  • NS3:S334T

NS4B

  • NS4B:S14I

NS5

  • NS5:R422K

env

  • env:V159A
  • env:L167F
  • env:Q391H
Deletions
N/A
Insertions
N/A

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