This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMWD.1

USA/NC32G-8-28-Cxp/2018-08-28
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-08-28
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
NC32G-8-28-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-25 15:11insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201788.1
Submitting group
Date submitted
2026-03-25 15:11:25 UTC
Date released
2026-03-25 15:41:30 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
94
Length
10917 (99%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:I241V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4A:V89A
  • NS4B:I240V
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:F155L
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T199C
  • C340T
  • C435T
  • A630G
  • C804T
  • T928C
  • T1442C
  • C1465T
  • G1662A
  • T1681C
  • C1750T
  • T1818C
  • G1947A
  • C2109T
  • C2172T
  • C2247T
  • C2304T
  • G2373A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS3

  • NS3:I241V

NS4A

  • NS4A:V89A

NS4B

  • NS4B:I240V

env

  • env:V159A
  • env:L167F

prM

  • prM:F155L
Deletions
N/A
Insertions
N/A

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