This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMVF.1

USA/LOC_000LMVF.1/2003-01-01
P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2003
Earliest release date
2010-07-28
Sampling location
USA (Connecticut)
Isolate name
WNV-1/US/BID-V4609/2003

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-18 12:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-07-28
NCBI update date
2011-08-08
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HM488228.1
Submitting group
Date submitted
2026-03-18 12:54:10 UTC
Date released
2026-03-18 13:05:52 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
36
Length
10621 (96.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:E109G
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:T115A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A564G
  • A630G
  • C660T
  • A808G
  • T1221C
  • C1431T
  • T1442C
  • C1465T
  • C2466T
  • A2795G
  • T2926C
  • C3327T
  • G3708T
  • C4107T
  • A4146G
  • C4803T
  • C4881T
  • G5280A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:E109G

env

  • env:V159A
  • env:L167F

prM

  • prM:T115A
Deletions
N/A
Insertions
N/A

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