This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMTK.1

USA/RE35L-8-2-Ocd/2017-08-02
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2017-08-02
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
RE35L-8-2-Ocd

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-05 16:38insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201785.1
Submitting group
Date submitted
2026-05-05 16:38:00 UTC
Date released
2026-05-05 17:14:18 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
41
Total deleted nucs
2
Total unknown nucs
4240
Length
10188 (53.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:I26V
  • NS2B:A103V
  • NS3:I356T
  • NS3:Q511H
  • NS4A:V85A
  • NS4B:I21V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C2109T
  • T3069C
  • A4294G
  • C4527T
  • T4530C
  • C4980T
  • C5457T
  • C5553T
  • C5889T
  • G6063T
  • C6093T
  • C6138T
  • A6144C
  • T6165C
  • T6312C
  • T6405C
  • C6426T
Deletions

10470, 10471
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2B

  • NS2B:I26V

NS3

  • NS3:Q511H

NS4B

  • NS4B:I21V
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue