This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMJ3.1

Display Name: USA/LOC_000LMJ3.1/2018-07-23
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2018-07-23
Collection date (lower bound)
2018-07-23
Collection date (upper bound)
2018-07-23
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
SM62G-7-23-Cxp-6

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10915
Total SNPs
69
Total inserted nucs
0
Total deleted nucs
2
Total ambiguous nucs
46
Total unknown nucs
0
Total frame shifts
0
Completeness
98.57%
Total stop codons
0

Submission details

Submission ID
OZ201790.1
Submitting group
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:25:23 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • C2304T
  • C2466T
  • C2688T
  • G2937A
  • C3501T
  • T3528C
  • C3912T
  • C3969T
  • G4088A
  • C4107T
    • Deletions
    10470, 10471
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I26V

    • NS4B

  • NS4B:M29I
  • NS4B:I240M

    • NS5

  • NS5:A860T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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