This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMJ3.1

USA/LOC_000LMJ3.1/2014-08-18
C. Aroh, M. D'Anton, C. Liang, P. Raj, B. Wakeland, N. Yan & E. Wakeland

UT Southwestern Medical Center, Department of Immunology

Sample details

Collection date
2014-08-18
Earliest release date
2018-12-31
Sampling location
USA (Montgomery Co. TX)
Isolate name
AVA1405153

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-25 21:18insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-12-31
NCBI update date
2018-12-31
INSDC accession

Host

Host

Submission details

Submission ID
MF175838.1
Submitting group
Date submitted
2026-02-25 21:17:49 UTC
Date released
2026-02-25 21:33:28 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
81
Total inserted nucs
3
Total deleted nucs
2
Total ambiguous nucs
12
Total frame shifts
2
Frame shifts
prM:98-167(nt:757-966),NS3:570-619(nt:6319-6468)
Length
11030 (99.9%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T348C
  • C435T
  • A630G
  • A981T
  • T1143C
  • T1442C
  • C1465T
  • C1467T
  • G1662A
  • C1750T
  • G3747A
  • C3912T
  • C3931T
  • C3969T
  • G4088A
  • C4107T
  • A4146G
    • Deletions

    10470, 10471
    Insertions

    ins_756:C, ins_762:A, ins_6318:C

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I26V

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:Y27H
  • NS5:A860T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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