This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMDE.1

USA/LOC_000LMDE.1/2018-07-18
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-07-18
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
BP40L-7-18-Cxs-9

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-19 23:33insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ201673.1
Submitting group
Date submitted
2026-02-19 23:33:38 UTC
Date released
2026-02-20 00:01:39 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
93
Total ambiguous nucs
3
Length
10917 (99%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1173T
  • A1203G
  • A1401G
  • T1442C
  • C1465T
  • T1965C
  • C1986T
  • T2052C
  • A2097C
  • C2181T
  • C2371T
  • C2466T
  • C2593T
  • C2784T
  • C2982T
  • T3138C
  • C3168T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:R101K

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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