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LOC_000LMCG.1
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Download FASTA
Download metadata TSV
USA/NO58G-8-27-Cxp/2018-08-27
N. M. Feriancek,
M. I. Breban,
E. Bourgikos,
A. Bransfield,
P. M. Armstrong,
C. B. Vogels &
N. D. Grubaugh
Yale School of Public Health, New Haven, CT
Sample details
Collection date
2018-08-27
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
NO58G-8-27-Cxp
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 20:49
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
OZ201763.1
BioProject accession
PRJEB80643
BioSample accession
SAMEA116354658
Host
Host
Culex pipiens
Submission details
Submission ID
OZ201763.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 20:49:08 UTC
Date released
2026-03-16 21:06:06 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LMCG.1.embl
Alignment and QC
Total SNPs
87
Total ambiguous nucs
9
Length
10917 (98.9%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS2A:
T
52
I
NS2A:
L
95
F
NS2A:
H
119
Y
NS2B:
A
103
V
NS3:
T
249
P
NS3:
S
334
T
NS3:
I
356
T
NS4A:
V
85
A
NS4B:
S
14
I
NS4B:
T
116
I
NS5:
K
177
R
NS5:
R
422
K
capsid:
S
120
T
env:
K
93
R
env:
T
126
I
env:
I
159
A
prM:
V
157
M
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
55
T
A
267
G
G
455
C
A
630
G
G
934
A
T
1236
C
T
1368
C
A
1401
G
T
1442
C
C
1465
T
T
1965
C
C
2010
T
A
2097
C
C
2371
T
C
2466
T
C
2593
T
T
3138
C
T
3180
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
NS2A
NS2A:
T
52
I
NS2A:
L
95
F
NS2A:
H
119
Y
NS3
NS3:
S
334
T
NS4B
NS4B:
S
14
I
NS4B:
T
116
I
NS5
NS5:
R
422
K
capsid
capsid:
S
120
T
env
env:
V
159
A
env:
L
167
F
prM
prM:
V
157
M
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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