This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LL6V.1

USA/BP39G-8-23-Cxp/2017-08-23
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2017-08-23
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
BP39G-8-23-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-13 13:22insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201723.1
Submitting group
Date submitted
2026-05-13 13:22:01 UTC
Date released
2026-05-13 14:00:25 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
70
Total unknown nucs
1418
Length
10147 (79.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:L126I
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S136A
  • NS4B:I240M
  • env:K93R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • A1284G
  • G1662T
  • C1750T
  • T2089C
  • C2109T
  • C2304T
  • C2466T
  • T2541C
  • A3108G
  • C3501T
  • T3528C
  • C3901A
  • C3912T
  • G3933A
  • C3969T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:L126I
  • NS2A:R188K

NS4B

  • NS4B:S136A
  • NS4B:I240M
Deletions
N/A
Insertions
N/A

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