This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LL6V.1

Thailand/LOC_000LL6V.1/2017
J. Puenpa, C. Auphimai, S. Korkong, S. Vongpunsawad, Y. Poovorawan & J. Chansaenroj

Center of Excellence in Clinical Virology

Sample details

Collection date
2017
Earliest release date
2018-07-18
Sampling location
Thailand
Isolate name
EV71_VP1_THA/CU2747/2017

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-07-18
NCBI update date
2018-07-18
INSDC accession

Host

Host

Submission details

Submission ID
MG843995.1
Submitting group
Date submitted
2026-10-09 13:33:52 UTC
Date released
2026-10-09 13:42:12 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
191
Length
1056 (14.3%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • G2360A
  • T2361C
  • A2369G
  • A2374G
  • A2375G
  • C2384T
  • T2387C
  • T2394C
  • C2405T
  • G2412C
  • T2417A
  • T2418C
  • G2420A
  • G2421C
  • A2423G
  • G2426A
  • A2430T
  • A2438G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

2A

  • 2A:T26N

VP1

  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A

VP3

  • VP3:Q221R
  • VP3:D234H
  • VP3:E237Q
  • VP3:T240S
Deletions
N/A
Insertions
N/A

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