This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Display Name: USA/LOC_000LKAN.1/2018-07-19
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2018-07-19
Collection date (lower bound)
2018-07-19
Collection date (upper bound)
2018-07-19
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
SM88G-7-19-Cxp-2

Data use terms

Data use terms
OPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10917
Total SNPs
88
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
3
Total unknown nucs
0
Total frame shifts
0
Completeness
98.96%
Total stop codons
0

Submission details

Submission ID
OZ201675.1
Date submitted
2025-10-21 15:23:37 UTC
Date released
2025-10-21 15:43:42 UTC

Lineage

Lineage
1A

Files

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C55T
  • A71G
  • A630G
  • C732T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • T1965C
  • A1968G
  • A2097C
  • C2371T
  • C2466T
  • C2593T
  • T3138C
  • C3504T
  • C3570T
  • C3680T
  • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G
  • NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:H119Y
  • NS3

  • NS3:S334T
  • NS4B

  • NS4B:S14I
  • NS5

  • NS5:R422K
  • env

  • env:V159A
  • env:L167F
  • Deletions
    None
    Insertions
    None

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