This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LKAN.1

Viet_Nam/LOC_000LKAN.1/2012
N. N. Duy, L. T. T. Huong, P. Ravel, L. T. S. Huong, A. Dwivedi, O. M. Sessions, Y. Hou, R. Chua, G. Kister, A. Afelt, C. Moulia, D. J. Gubler, V. D. Thiem, N. T. H. Thanh, C. Devaux, T. N. Duong, N. T. Hien, E. Cornillot, L. Gavotte, R. Frutos, R. J. Frutos, N. Ngu Duy, D. Gubler & S. O. Michael

CIRAD, Bios

Sample details

Collection date
2012
Earliest release date
2017-05-21
Sampling location
Viet Nam
Isolate name
2012225_HN_12_03_07

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-05-21
NCBI update date
2017-05-21
INSDC accession

Submission details

Submission ID
KX906348.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
97
Length
559 (7.55%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • C2738A
  • C2741T
  • T2744C
  • G2747A
  • C2750T
  • G2753T
  • C2774T
  • C2780A
  • T2786C
  • G2792A
  • C2798T
  • A2804G
  • G2807A
  • A2810G
  • T2822C
  • C2834T
  • C2852T
  • A2870G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:I284V
Deletions
N/A
Insertions
N/A

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