This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LKAN.1

Display Name: USA/LOC_000LKAN.1/2016-08-09
Feriancek, N. M.; Breban, M. I.; Bourgikos, E.; Bransfield, A.; Armstrong, P. M.; Vogels, C. B.; Grubaugh, N. D.

Submission details

Submission ID
OZ201716.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 11:36:39 UTC
Date released
2025-04-03 11:43:37 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-04-03 11:36insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

Bioproject accession
PRJEB80643
Biosample accession
SAMEA116354256
INSDC accession
OZ201716.1
NCBI release date
2024-11-07
NCBI update date
2024-11-08

Alignment and QC metrics

Completeness
62.19%
Length
11029
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
57
Total stop codons
0
Total unknown nucs
4169

Sample details

Earliest release date
2024-11-07
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2016-08-09
Collection date (lower bound)
2016-08-09
Collection date (upper bound)
2016-08-09
Isolate name
E44L-8-9-Cmo

Host

Host name scientific
Culiseta morsitans
Host taxon id
329107

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • C456T
  • C474T
  • T585C
  • A630G
  • T928C
  • C1050T
  • G1662A
  • T1681C
  • C1750T
  • C2109T
  • C2304T
  • G3166A
  • G3321A
  • C3501T
  • T3528C
  • C3912T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:G233S

    • NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:K76R

    • prM

  • prM:F155L
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue