This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LJVJ.1

Display Name: USA/LOC_000LJVJ.1/2018-08-29
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2018-08-29
Collection date (lower bound)
2018-08-29
Collection date (upper bound)
2018-08-29
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
SM88G-8-29-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-22 14:38insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10917
Total SNPs
76
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
121
Total frame shifts
0
Completeness
97.89%
Total stop codons
0

Submission details

Submission ID
OZ201699.1
Submitting group
Date submitted
2025-10-22 14:38:03 UTC
Date released
2025-10-22 14:54:09 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A53G
  • A202G
  • G222A
  • G237A
  • C435T
  • A507G
  • T570C
  • A630G
  • T1083A
  • G1117A
  • C1356T
  • T1442C
  • C1465T
  • C1560T
  • C1953T
  • C2218T
  • C2466T
  • T2571C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:E180D
  • NS3:I435L

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:S36G

    • env

  • env:A51T
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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