This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LJVJ.1

USA/LOC_000LJVJ.1/2018-07-19
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-07-19
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
EH43G-7-19-Cxr

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-16 22:14insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ201679.1
Submitting group
Date submitted
2026-02-16 22:13:50 UTC
Date released
2026-02-16 22:45:28 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
71
Length
10917 (99%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A53G
  • G237A
  • C435T
  • A507G
  • T570C
  • A630G
  • T900C
  • G1117A
  • A1128G
  • T1442C
  • C1465T
  • C1560T
  • C1953T
  • C2218T
  • G2265T
  • C2370T
  • C2466T
  • T3138C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:E180D
  • NS3:I435L

    • NS4B

  • NS4B:I240M

    • env

  • env:A51T
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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