This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LHM1.1

Display Name: USA/LOC_000LHM1.1/2014-07-01
C. Aroh, M. D'Anton, C. Liang, P. Raj, B. Wakeland, N. Yan & E. Wakeland

Submission details

Submission ID
MF175840.1
Submitting group
Date submitted
2025-07-04 13:34:16 UTC
Date released
2025-07-04 13:38:36 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UT Southwestern Medical Center, Department of Immunology

Alignment and QC metrics

Completeness
99.69%
Frame shifts
prM:98-167(nt:757-966),NS3:570-619(nt:6319-6468)
Length
11032
Total ambiguous nucs
34
Total deleted nucs
0
Total frame shifts
2
Total inserted nucs
3
Total SNPs
49
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2018-12-31
Collection subdivision level 1
Montgomery Co. TX
Collection country
USA
Collection date
2014-07-01
Collection date (lower bound)
2014-07-01
Collection date (upper bound)
2014-07-01
Isolate name
AVA1402507

Host

Host name scientific
Culex quinquefasciatus
Host taxon id

INSDC

INSDC accession
NCBI release date
2018-12-31
NCBI update date
2018-12-31

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T227C
  • C340T
  • C435T
  • A630G
  • A744G
  • T1150C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C3912T
  • C3969T
  • G4088A
  • C4107T
  • A4146G
  • A4321G
  • T4530C
  • C4749T
    • Deletions
    None
    Insertions
    ins_762:A, ins_756:C, ins_6318:C

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I35V

    • NS3

  • NS3:R275K

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:I44T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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