This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LGSS.1

Display Name: USA/LOC_000LGSS.1/2018-08-14
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2018-08-14
Collection date (lower bound)
2018-08-14
Collection date (upper bound)
2018-08-14
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
SW86G-8-14-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10920
Total SNPs
93
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
2
Total unknown nucs
0
Total frame shifts
0
Completeness
98.99%
Total stop codons
0

Submission details

Submission ID
OZ201589.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:42:23 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A196T
  • A630G
  • G738T
  • C975T
  • A1174G
  • A1401G
  • T1442C
  • C1465T
  • T1965C
  • A2097C
  • C2172T
  • C2371T
  • C2466T
  • T2520C
  • C2781T
  • C3060T
  • T3105C
  • T3138C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T
  • NS3:I407V

    • NS4B

  • NS4B:S14I

    • capsid

  • capsid:M34L

    • env

  • env:T70A
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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