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LOC_000LCRY.1
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Download FASTA
Download metadata TSV
Philippines/LOC_000LCRY.1/2015-11
N. Chaimongkol,
M. Okamoto,
Y. Furuse,
H. Nishimura &
H. Oshitani
Tohoku University Graduate School of Medicine, Department of Virology
Sample details
Collection date
2015-11
Earliest release date
2017-09-02
Sampling location
Philippines
Isolate name
TB8-15-Ph508
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-09-02
NCBI update date
2017-09-02
INSDC accession
KX789239.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KX789239.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC
Clade
Clade EV-D68
A1
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
356
Total deleted nucs
27
Length
2835 (38.8%)
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
C
177
T
T
187
C
C
203
T
C
204
T
A
232
T
T
262
C
G
263
A
C
264
T
C
268
T
G
272
T
G
402
A
A
403
G
G
435
A
C
471
T
A
507
G
C
518
T
A
586
T
T
599
C
Show more
Deletions
679-702, 2806-2808
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
AY426531.1
reference
Substitutions
VP1
VP1:
S
1
L
VP1:
N
2
D
VP1:
H
5
D
VP1:
G
6
A
VP1:
V
13
I
VP1:
V
41
A
VP1:
T
46
S
VP1:
G
76
S
VP1:
K
84
R
VP1:
A
92
T
VP1:
S
95
E
VP1:
G
97
Q
VP1:
H
99
D
VP1:
I
131
V
VP1:
N
140
S
VP1:
G
141
S
VP1:
N
142
S
VP1:
M
148
T
Show more
VP2
VP2:
S
59
A
VP2:
R
67
K
VP2:
S
73
A
VP2:
N
74
E
VP2:
T
76
K
VP2:
S
104
C
VP2:
H
135
Y
VP2:
D
136
N
VP2:
G
142
R
VP2:
N
144
A
VP2:
R
151
E
VP2:
N
156
S
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
M
222
V
VP2:
V
225
M
VP3
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
N
VP3:
N
62
V
VP3:
E
65
Q
VP3:
R
68
K
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
I
153
V
VP3:
I
163
V
VP3:
I
166
V
VP3:
S
180
N
VP3:
S
204
N
VP3:
D
208
N
VP3:
I
216
V
Deletions
VP1
VP1:144
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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