This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LA73.1

Display Name: USA/LOC_000LA73.1/2018-09-05
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2018-09-05
Collection date (lower bound)
2018-09-05
Collection date (upper bound)
2018-09-05
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
WO73L-9-5-Aci

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Aedes cinereus

Alignment and QC metrics

Length
9868
Total SNPs
47
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
1
Total unknown nucs
3908
Total frame shifts
0
Completeness
54.03%
Total stop codons
0

Submission details

Submission ID
OZ201405.1
Submitting group
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:24:48 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C55T
  • A630G
  • C693T
  • T3138C
  • T3180C
  • G4944A
  • A4971G
  • C4986T
  • C5148T
  • T5611A
  • C5658T
  • C5667T
  • A5799C
  • A5964G
  • T5973C
  • T5994C
  • T6405C
  • C6426T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:R422K
    • Deletions
    None
    Insertions
    None

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