This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L9JF.1

Display Name: USA/LOC_000L9JF.1/2018-08-08
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2018-08-08
Collection date (lower bound)
2018-08-08
Collection date (upper bound)
2018-08-08
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
D41G-8-8-Ota

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Ochlerotatus taeniorhynchus

Alignment and QC metrics

Length
10919
Total SNPs
52
Total inserted nucs
2
Total deleted nucs
0
Total ambiguous nucs
1
Total unknown nucs
4848
Total frame shifts
1
Frame shifts
NS5:96-905(nt:7966-10395)
Completeness
55.02%
Total stop codons
0

Submission details

Submission ID
OZ201346.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:41:48 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G327A
  • C340T
  • C435T
  • G495A
  • A630G
  • C1047T
  • C1056T
  • T1062C
  • C1089T
  • G1662A
  • T1749C
  • C1750T
  • T1755C
  • C3912T
  • C3969T
  • G4088A
  • C4107T
  • A4146G
    • Deletions
    None
    Insertions
    ins_7965:A, ins_10568:C

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS3

  • NS3:K382R
    • Deletions
    None
    Insertions
    None

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