This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L9AY.1

USA/LOC_000L9AY.1/2004-08-03
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2004-08-03
Earliest release date
2016-08-02
Sampling location
USA (Suffolk Co., NY)
Isolate name
WNV-1/Culex/USA/33040049/2004

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-22 15:07insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547454.1
Submitting group
Date submitted
2026-06-22 15:07:45 UTC
Date released
2026-06-22 15:22:28 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
25
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:M80I
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:K647R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T1442C
  • C1465T
  • C1560A
  • C2160T
  • C2466T
  • C2598T
  • G3765T
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • T5994C
  • C6138T
  • T6264C
  • T6405C
  • C6996T
  • A7905G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:M80I

NS5

  • NS5:K647R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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