This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L92E.1

Viet_Nam/LOC_000L92E.1/2018-11-07
L. N. Golitsyna, T. T. T. Nguyen, N. I. Romanenkova, A. V. Leonov, N. V. Ponomareva, V. V. Zverev, O. I. Kanaeva, N. R. Rozaeva, M. A. Bichurina & N. A. Novikova

I.N. Blokhina Nizhny Novgorod Research Institute of Epidemiology and Microbiology, Laboratory of Molecular Epidemiology of Viral Infections

Sample details

Collection date
2018-11-07
Earliest release date
2022-10-31
Sampling location
Viet Nam (Can Tho)
Isolate name
GS/1176_VNM_2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-14 11:41insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-10-31
NCBI update date
2022-10-31
INSDC accession

Host

Host

Submission details

Submission ID
OL381909.1
Submitting group
Date submitted
2026-04-14 11:41:36 UTC
Date released
2026-04-14 12:13:18 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Alignment and QC

Total SNPs
210
Length
894 (12.1%)
Variant
False

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • C2445T
  • C2454T
  • C2457A
  • C2460T
  • C2463T
  • T2470C
  • A2473G
  • C2475A
  • G2477A
  • C2478T
  • T2481A
  • T2483C
  • G2487C
  • C2488A
  • G2490A
  • C2493T
  • A2496T
  • C2498G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY421767.1 reference

Substitutions

VP1

  • VP1:S13G
  • VP1:S14N
  • VP1:V16A
  • VP1:T21S
  • VP1:G23V
  • VP1:Q24T
  • VP1:D25N
  • VP1:N27E
  • VP1:T28S
  • VP1:G31N
  • VP1:A33T
  • VP1:M70V
  • VP1:A78T
  • VP1:S81N
  • VP1:V107T
  • VP1:F148Y
  • VP1:Q223L
  • VP1:V240E
Deletions
N/A
Insertions
N/A

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