This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L92E.1

South_Africa/SAE134_08/2008
M. Venter, M. A. Pretorius, J. A. Fuller, E. M. Botha, M. Rakgotho, V. Stivaktas, S. van Niekerk, M. Romito & J. Williams

University of Pretoria, Centre for Viral Zoonoses

Sample details

Collection date
2008
Earliest release date
2017-12-31
Sampling location
South Africa (North West)
Isolate name
SAE134_08

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-12-31
NCBI update date
2017-12-31
INSDC accession

Host

Host

Submission details

Submission ID
KY176721.1
Submitting group
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:04:51 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
35
Total deleted nucs
7
Total frame shifts
1
Frame shifts
NS5:473-905(nt:9097-10395)
Length
215 (2.01%)
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T9108C
  • C9123G
  • A9126G
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • T9204A
  • C9207T
  • G9210A
  • G9216A
  • C9219A
  • C9222G
Deletions

9090-9096
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
N/A
Deletions

NS5

NS5:471, NS5:472
Insertions
N/A

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