This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L92E.1

USA/LOC_000L92E.1/2018-08-08
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-08-08
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
D41G-8-8-Ota

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 01:06insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ201346.1
Submitting group
Date submitted
2026-02-21 01:06:28 UTC
Date released
2026-02-21 01:25:43 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
52
Total inserted nucs
2
Total ambiguous nucs
1
Total unknown nucs
4848
Total frame shifts
1
Frame shifts
NS5:96-905(nt:7966-10395)
Length
10919 (55%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G327A
  • C340T
  • C435T
  • G495A
  • A630G
  • C1047T
  • C1056T
  • T1062C
  • C1089T
  • G1662A
  • T1749C
  • C1750T
  • T1755C
  • C3912T
  • C3969T
  • G4088A
  • C4107T
  • A4146G
    • Deletions
    N/A
    Insertions

    ins_7965:A, ins_10568:C

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS3

  • NS3:K382R
    • Deletions
    N/A
    Insertions
    N/A

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