This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L92E.1

Display Name: Russia/LOC_000L92E.1/2014-12-19
E. Sapega, L. Butakova, O. Trotsenko & V. Kotova

Sample details

Collection date
2014-12-19
Collection date (lower bound)
2014-12-19
Collection date (upper bound)
2014-12-19
Earliest release date
2019-09-03
Collection country
Russia
Isolate name
843SAH/RUS/2014

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-28 16:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Khabarovsk Research Institute of Epidemiology and Microbiology, Far Eastern Regional Research and Methodological Center for the Study of enterovirus infections

INSDC

NCBI release date
2019-09-03
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
324
Total SNPs CV-A16
72
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
1196
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
1
Frame shifts CV-A16
CVA16-VP1:51-297(nt:2596-3336)
Completeness CV-A16
20.50%

Submission details

Submission ID
MK491776.1.CV-A16
Submitting group
Date submitted
2025-10-28 16:26:42 UTC
Date released
2025-10-28 17:09:26 UTC

Clade

Clade CV-A16
B

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C2600T
  • C2601G
  • C2604G
  • C2607G
  • T2610G
  • T2613C
  • A2619C
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • T2634C
  • A2637T
  • A2640G
  • C2643T
  • C2644A
  • G2655A
    • Deletions
    2552-2595, 2910-4061
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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