This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L8CV.1

USA/LOC_000L8CV.1/2018-09-05
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-09-05
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
SM62G-9-5-Cxp-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-03 13:47insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ201497.1
Submitting group
Date submitted
2026-03-03 13:47:06 UTC
Date released
2026-03-03 14:04:44 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
104
Length
10917 (99%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:L241M
  • NS2A:R188K
  • NS2B:A103V
  • NS2B:I107V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:T48A
  • NS4B:I240M
  • NS5:K177R
  • NS5:N419K
  • NS5:E830K
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V156I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • C450T
  • A630G
  • G931A
  • T945C
  • C1047T
  • T1407C
  • T1442C
  • C1465T
  • C1560T
  • G1662A
  • C1750T
  • T1755C
  • T2002C
  • C2109T
  • C2304T
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:L241M

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I107V

NS4B

  • NS4B:T48A
  • NS4B:I240M

NS5

  • NS5:N419K
  • NS5:E830K

env

  • env:V159A
  • env:L167F

prM

  • prM:V156I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue