This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L7N9.1

USA/BP39G-7-26-Cxp-2/2016-07-26
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. F. Vogels & N. D. Grubaugh

Yale School of Public Health; Grubaugh Lab; 60 College St; 06510 New Haven; CT; USA Yale School Of Public Health; Ct; Usa

Sample details

Collection date
2016-07-26
Earliest release date
2024-10-05
Sampling location
USA
Isolate name
BP39G-7-26-Cxp-2

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2024-10-05
NCBI update date
2024-11-13
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ187637.2
Submitting group
Date submitted
2026-08-28 13:41:09 UTC
Date released
2026-08-28 14:00:41 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
65
Total ambiguous nucs
1
Length
10917 (99%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:Q347R
  • NS2A:I187V
  • NS2B:A103V
  • NS3:E180D
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:V23I
  • NS4B:M29I
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C93T
  • G237A
  • T309C
  • C435T
  • A630G
  • C687T
  • C693T
  • T1442C
  • C1465T
  • C1560T
  • C1599T
  • C1953T
  • A2313G
  • T2400C
  • C2466T
  • G2610A
  • C2787T
  • C3348T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:Q347R

NS2A

  • NS2A:I187V

NS3

  • NS3:E180D

NS4B

  • NS4B:V23I
  • NS4B:M29I

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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