This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L7N9.1

USA/LOC_000L7N9.1/2018-08-29
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-08-29
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
MO52G-8-29-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ201304.1
Submitting group
Date submitted
2026-02-27 15:36:10 UTC
Date released
2026-02-27 15:52:37 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
95
Total deleted nucs
2
Total ambiguous nucs
2
Length
10915 (99%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:I26V
  • NS2B:A41V
  • NS2B:A103V
  • NS3:S71N
  • NS3:T249P
  • NS3:I356T
  • NS3:K382R
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:A860T
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:M112L
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C292T
  • C340T
  • C423T
  • C435T
  • A630G
  • A799T
  • A981T
  • T1143C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1822C
  • C2109T
  • T2259C
  • C2304T
  • C2466T
  • G2886A
Deletions

10470, 10471
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I26V
  • NS2B:A41V

NS3

  • NS3:S71N
  • NS3:K382R

NS4B

  • NS4B:I240M

NS5

  • NS5:A860T

env

  • env:V159A
  • env:L167F

prM

  • prM:M112L
Deletions
N/A
Insertions
N/A

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