This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L768.1

Display Name: Romania/LOC_000L768.1/2013-08-04
S. Dinu, I. Panculescu-Gatej, A. Cotar, A. Sirbu, E. Falcuta, L. Prioteasa, G. Oprisan, D. Badescu, P. Reiter & C. Ceianu

Submission details

Submission ID
LK022078.1
Submitting group
Date submitted
2025-07-04 13:34:16 UTC
Date released
2025-07-04 13:38:06 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
NIRDMI Cantacuzino, Molecular Epidemiology, Splaiul Indepedentei, 103, Bucharest, N/A

Alignment and QC metrics

Completeness
6.02%
Length
664
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
134
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2014-05-20
Collection subdivision level 1
Danube Delta, Mila 26
Collection country
Romania
Collection date
2013-08-04
Collection date (lower bound)
2013-08-04
Collection date (upper bound)
2013-08-04
Isolate name
RO_mo294/2013

Host

Host name scientific
Culex pipiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2014-05-20
NCBI update date
2014-05-20

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G9372A
  • T9375C
  • C9376T
  • T9378A
  • C9381G
  • A9382C
  • G9385T
  • C9402A
  • T9405C
  • T9408A
  • T9417C
  • C9430A
  • C9432G
  • G9435A
  • T9438G
  • T9441C
  • T9444C
  • A9447G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue