This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L768.1

Display Name: USA/LOC_000L768.1/2016-07-26
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Submission details

Submission ID
OZ200913.1
Submitting group
Date submitted
2025-07-18 15:33:42 UTC
Date released
2025-07-18 15:41:41 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:33insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2024-11-05
NCBI update date
2024-11-06

Alignment and QC metrics

Completeness
98.98%
Length
10917
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
84
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2024-11-05
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2016-07-26
Collection date (lower bound)
2016-07-26
Collection date (upper bound)
2016-07-26
Isolate name
SM63L-7-26-Cxp

Host

Host name scientific
Culex pipiens
Host taxon id

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G327A
  • C340T
  • C435T
  • T609C
  • A630G
  • C816T
  • A1287G
  • T1442C
  • G1461A
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • C2304T
  • C2415T
  • C2466T
  • T2475C
  • C2961T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:V58I
  • NS2A:R188K

    • NS4A

  • NS4A:A85T

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:N339D

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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