This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L6YQ.1

Spain/not_provided/unknown
J. Perez-Florido

Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

Sample details

Earliest release date
2021-11-05
Sampling location
Spain
Isolate name
not_provided

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2021-11-05
NCBI update date
2021-11-05
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OU953897.1
Submitting group
Date submitted
2026-07-13 16:58:05 UTC
Date released
2026-07-13 17:16:54 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
453
Total ambiguous nucs
3
Total unknown nucs
459
Length
10878 (94.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:A70S
  • NS1:K170R
  • NS2A:G211R
  • NS3:T436A
  • NS4B:E249D
  • NS5:K41R
  • NS5:K177R
  • NS5:R422K
  • capsid:A52T
  • env:K93R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T195A
  • G222A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
  • G786A
  • T826C
  • T850C
  • C858T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S
  • NS1:K170R

NS2A

  • NS2A:G211R

NS2B

  • NS2B:V103A

NS3

  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

NS4A

  • NS4A:A85V

NS4B

  • NS4B:E249D

NS5

  • NS5:K41R
  • NS5:R422K

capsid

  • capsid:A52T

env

  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue