This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000L6YQ.1
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Display Name: USA/LOC_000L6YQ.1/2018-08-09
Feriancek,
N. M.; Breban,
M. I.; Bourgikos,
E.; Bransfield,
A.; Armstrong,
P. M.; Vogels,
C. B.; Grubaugh,
N. D.
Submission details
Submission ID
OZ201317.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-02 15:57:48 UTC
Date released
2024-12-02 16:04:27 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-02 15:58
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Yale School of Public Health, New Haven, CT
INSDC
Bioproject accession
PRJEB80643
Biosample accession
SAMEA116354567
INSDC accession
OZ201317.1
NCBI release date
2024-11-07
NCBI update date
2024-11-08
Alignment states and QC metrics
Completeness
98.98%
Length
11028
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
98
Total stop codons
0
Total unknown nucs
113
Sample details
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2018-08-09
Collection date (lower bound)
2018-08-09
Collection date (upper bound)
2018-08-09
Isolate name
SM88G-8-9-Cxp
Host
Host name scientific
Culex pipiens
Host taxon id
7175
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
C
340
T
C
435
T
A
630
G
C
732
T
T
928
C
A
981
T
T
1083
C
T
1143
C
T
1442
C
C
1465
T
T
1581
C
T
1584
C
G
1662
A
C
1750
T
C
2109
T
C
2304
T
C
2466
T
T
3105
C
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Deletions
10469
Insertions
None
Amino acid mutations
Substitutions
NS2A
NS2A:
R
188
K
NS2B
NS2B:
I
26
V
NS4B
NS4B:
I
240
M
NS5
NS5:
A
860
T
env
env:
V
159
A
env:
L
167
F
prM
prM:
F
155
L
Deletions
None
Insertions
None
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