This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L6GP.1

Display Name: Greece/LOC_000L6GP.1/2022-02-20
Z. Athanasakopoulou, M. Sofia, V. Skampardonis, A. Giannakopoulos, P. Birtsas, K. Tsolakos, V. Spyrou, D. C. Chatzopoulos, M. Satra, V. Diamantopoulos, S. Mpellou, D. Galamatis, V. G Papatsiros, C. Billinis, C. Tsolakos & V. G. Papatsiros

Sample details

Collection date
2022-02-20
Collection date (lower bound)
2022-02-20
Collection date (upper bound)
2022-02-20
Earliest release date
2023-12-03
Collection country
Greece
Collection subdivision level 1
Messenia
Isolate name
GRE-Wild bird3

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 19:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Faculty of Veterinary Science, University of Thessaly, Microbiology and Parasitology

INSDC

NCBI release date
2023-12-03
NCBI update date
2023-12-03
INSDC accession

Host

Host taxon id
Host name scientific
Corvidae

Alignment and QC metrics

Length
346
Total SNPs
65
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
3.14%
Total stop codons
0

Submission details

Submission ID
OR825043.1
Submitting group
Date submitted
2025-09-16 19:40:03 UTC
Date released
2025-09-16 19:54:57 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295C
  • G5308T
  • A5313G
  • A5316C
  • G5328T
  • G5343A
  • A5346C
  • C5349A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:A233S
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
    • Deletions
    None
    Insertions
    None

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