This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L5S3.1

China/LOC_000L5S3.1/2015-10
L. Chen

Shenzhen Center for Disease Control and Prevention, Institute of Pathogen Biology

Sample details

Collection date
2015-10
Earliest release date
2018-04-16
Sampling location
China
Isolate name
CVA16/Shenzhen499/CHN/2015

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-01 11:59insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-04-16
NCBI update date
2018-04-16
INSDC accession

Host

Host

Submission details

Submission ID
MH003957.1
Submitting group
Date submitted
2026-04-01 11:58:55 UTC
Date released
2026-04-01 12:18:29 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
220
Length
891 (12%)
Variant
False

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454C
  • C2463T
  • G2475A
  • G2476A
  • C2481G
  • C2483A
  • T2484C
  • T2485A
  • C2486A
  • C2487T
  • G2489A
  • T2493G
  • G2494A
  • G2495A
  • T2496C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:G3P
  • VP1:A11T
  • VP1:T13N
  • VP1:S14N
  • VP1:R15Q
  • VP1:G17N
  • VP1:A19S
  • VP1:S22A
  • VP1:L23M
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
Deletions
N/A
Insertions
N/A

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