This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L5S3.1

Greece/LOC_000L5S3.1/2022-02-26
Z. Athanasakopoulou, M. Sofia, V. Skampardonis, A. Giannakopoulos, P. Birtsas, K. Tsolakos, V. Spyrou, D. C. Chatzopoulos, M. Satra, V. Diamantopoulos, S. Mpellou, D. Galamatis, V. G Papatsiros, C. Billinis, C. Tsolakos & V. G. Papatsiros

Faculty of Veterinary Science, University of Thessaly, Microbiology and Parasitology

Sample details

Collection date
2022-02-26
Earliest release date
2023-12-03
Sampling location
Greece (Arcadia)
Isolate name
GRE-Wild bird7

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-22 16:11insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-12-03
NCBI update date
2023-12-03
INSDC accession

Host

Host

Submission details

Submission ID
OR825047.1
Submitting group
Date submitted
2026-04-22 16:11:26 UTC
Date released
2026-04-22 16:55:27 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
59
Total deleted nucs
144
Length
338 (4.37%)
Amino Acid Mutations from founder clade
  • NS3:H249P
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T5123C
  • G5280A
  • A5283C
  • T5292C
  • G5295C
  • G5308T
  • A5313G
  • A5316C
  • G5328T
  • G5343A
  • A5346C
  • C5349A
  • A5364G
  • T5367C
  • A5369G
  • T5382C
  • T5397C
  • T5403C
Deletions

5126-5179, 5188-5277
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:A233S
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
Deletions
N/A
Insertions
N/A

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