This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L5S3.1

Display Name: China/LOC_000L5S3.1
X. Fu, L. Mao, Z. Wan, R. Xu, Y. Ma, L. Shen, X. Jin, C. Zhang & Y. Hu

Sample details

Collection date (upper bound)
2020-03-09
Earliest release date
2020-03-09
Collection country
China
Isolate name
Zhenjiang-CA6-2014

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-29 20:47insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur of Shanghai, Chinese Academy of Sciences, Pathogen Discovery and Big Data Center, CAS Key Laboratory of Molecular Virology & Immunology

INSDC

NCBI release date
2020-03-09
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
296
Total SNPs CV-A16
70
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
44
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
1
Frame shifts CV-A16
CVA16-VP1:51-297(nt:2596-3336)
Completeness CV-A16
4.59%

Submission details

Submission ID
MK322337.1.CV-A16
Submitting group
Date submitted
2025-10-29 20:46:53 UTC
Date released
2025-10-29 21:22:59 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • A2537G
  • G2553C
  • C2554A
  • A2555G
  • A2559T
  • G2598A
  • C2600T
  • C2601G
  • C2604G
  • C2607G
  • T2610G
  • A2619T
  • C2620A
  • A2621G
  • G2622T
  • T2625C
  • G2626A
  • T2634C
    • Deletions
    2541-2549, 2561-2595
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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