This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L53G.1

Spain/LOC_000L53G.1/2021-08-30
Z. Varga, R. B. Mari, J. R. Iranzo, K. Kurucz, E. G. Toth, B. Zana, S. Zeghbib, T. Gorfol, F. Jakab, G. Kemenesi & P. Urban

University of Pecs, National Laboratory of Virology

Sample details

Collection date
2021-08-30
Earliest release date
2023-10-10
Sampling location
Spain
Isolate name
8/1

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-10-10
NCBI update date
2023-10-10
INSDC accession

Host

Host

Submission details

Submission ID
OR472391.1
Submitting group
Date submitted
2026-08-28 13:41:09 UTC
Date released
2026-08-28 13:59:31 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
484
Total inserted nucs
1
Length
10962 (99.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:A70S
  • NS1:K170R
  • NS2A:G211R
  • NS3:A177V
  • NS3:T436A
  • NS4B:E249D
  • NS5:K41R
  • NS5:K177R
  • NS5:R422K
  • capsid:A52T
  • capsid:L117M
  • env:K93R
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T195A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C381T
  • C445A
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
Deletions
N/A
Insertions
ins_10492:A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A70S
  • NS1:K170R

NS2A

  • NS2A:G211R

NS2B

  • NS2B:V103A

NS3

  • NS3:A177V
  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

NS4A

  • NS4A:A85V

NS4B

  • NS4B:E249D

NS5

  • NS5:K41R
  • NS5:R422K

capsid

  • capsid:A52T
  • capsid:L117M

env

  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

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