This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L53G.1

USA/MFL-20-7/2020-06-09
H. R. Hughes, K. Burkhalter & D. Stanek

Centers for Disease Control and Prevention, Division of Vector-borne Diseases

Sample details

Collection date
2020-06-09
Earliest release date
2023-10-25
Sampling location
USA (Miami Florida)
Isolate name
MFL-20-7

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-10-25
NCBI update date
2023-10-25
INSDC accession

Host

Host

Submission details

Submission ID
OR605719.1
Submitting group
Date submitted
2026-09-11 12:56:30 UTC
Date released
2026-09-11 13:14:09 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
125
Total deleted nucs
2
Length
10785 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:K221R
  • NS2A:M90V
  • NS2A:R188K
  • NS2A:L212F
  • NS2B:I26V
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:F27I
  • NS4B:E31D
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C205T
  • C340T
  • C435T
  • G504T
  • C573T
  • A630G
  • T891C
  • T946C
  • A981T
  • A1044G
  • T1107C
  • C1176T
  • A1362G
  • T1442C
  • A1446T
  • C1465T
  • C1635T
  • G1662A
Deletions
10470, 10471
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:K221R

NS2A

  • NS2A:M90V
  • NS2A:R188K
  • NS2A:L212F

NS2B

  • NS2B:I26V

NS4B

  • NS4B:F27I
  • NS4B:E31D

NS5

  • NS5:K314R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue