This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L53G.1

USA/LOC_000L53G.1/2016-09-12
N. Grubaugh, N. Matteson, K. Gangavarupa, R. Smith & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2016-09-12
Earliest release date
2023-08-02
Sampling location
USA (Story, Iowa)
Isolate name
WNV/mosquito/Story-IA-USA/2016-09-12/W1935

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 16:50insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721845.1
Submitting group
Date submitted
2026-06-04 16:50:25 UTC
Date released
2026-06-04 17:11:55 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
71
Total ambiguous nucs
1
Total unknown nucs
455
Length
10302 (89.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:L95F
  • NS2A:A224V
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:K8R
  • NS4B:I240M
  • NS4B:I245V
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:A161V
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G177A
  • A630G
  • T850C
  • C1242T
  • A1341C
  • A1401G
  • T1442C
  • C1448T
  • C1465T
  • A2097C
  • C2371T
  • T2391C
  • C2466T
  • C3348T
  • C3504T
  • C3808T
  • C4057T
  • C4107T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:L95F
  • NS2A:A224V

NS3

  • NS3:S334T

NS4B

  • NS4B:K8R
  • NS4B:I240M
  • NS4B:I245V

env

  • env:V159A
  • env:A161V
  • env:L167F
Deletions
N/A
Insertions
N/A

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