This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
West Nile Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
West Nile Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000L53G.1
Download
Download FASTA
Download metadata TSV
Pakistan/LOC_000L53G.1/2023-01-01
M. Umair,
M. Ammar,
S. A. Haider,
Z. Jamal &
M. Salman
National Institute of Health, Department of Virology
Sample details
Collection date
2023-01-01/2023-11-08
Earliest release date
2023-11-08
Sampling location
Pakistan
Isolate name
WNV/PAK-01/2023
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-11-08
NCBI update date
2023-11-08
INSDC accession
OR728658.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OR728658.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-17 11:14:52 UTC
Date released
2026-09-17 11:32:27 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000L53G.1.embl
Alignment and QC
Total SNPs
329
Total deleted nucs
1
Total unknown nucs
1663
Length
10470 (79.9%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
S
99
P
NS1:
L
111
F
NS1:
E
289
D
NS1:
T
298
I
NS1:
D
326
G
NS2A:
H
119
Y
NS2A:
V
155
A
NS2A:
I
183
V
NS2A:
D
226
N
NS2B:
A
36
T
NS2B:
A
103
V
NS2B:
I
107
V
NS3:
T
249
P
NS3:
S
421
N
NS4A:
V
85
T
NS5:
K
177
R
env:
F
90
Y
Show more
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
G
420
A
C
474
T
T
510
C
T
513
C
T
528
C
C
534
T
T
585
C
A
630
G
T
634
G
T
666
C
C
708
T
C
745
T
G
789
A
G
873
A
G
903
A
C
911
A
A
919
C
T
945
C
Show more
Deletions
10827
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
S
99
P
NS1:
L
111
F
NS1:
E
289
D
NS1:
T
298
I
NS1:
D
326
G
NS2A
NS2A:
H
119
Y
NS2A:
V
155
A
NS2A:
I
183
V
NS2A:
D
226
N
NS2B
NS2B:
A
36
T
NS2B:
I
107
V
NS3
NS3:
T
356
I
NS3:
S
421
N
NS4A
NS4A:
A
85
T
env
env:
F
90
Y
env:
I
126
T
env:
I
135
V
env:
V
159
I
env:
L
167
F
env:
V
491
I
prM
prM:
S
57
A
prM:
T
149
N
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue