This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L53G.1

USA/SM88L-8-13-Cxp/2019-08-13
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2019-08-13
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
SM88L-8-13-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 10:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ201379.1
Submitting group
Date submitted
2026-03-10 10:37:37 UTC
Date released
2026-03-10 10:53:23 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
81
Total ambiguous nucs
16
Total unknown nucs
1
Length
10917 (98.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • capsid:S2F
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:A139V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C101T
  • C340T
  • C435T
  • A525T
  • A630G
  • T642C
  • C881T
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2040T
  • C2109T
  • C2304T
  • C2466T
  • A2502G
  • G2691A
  • G2751A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS4B

  • NS4B:I240M

capsid

  • capsid:S2F

env

  • env:V159A
  • env:L167F

prM

  • prM:A139V
Deletions
N/A
Insertions
N/A

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