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LOC_000L53G.1
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Download FASTA
Download metadata TSV
USA/LOC_000L53G.1/2017-08-01
N. Grubaugh,
N. Matteson,
K. Gangavarupa,
U. Balasuriya,
R. Christofferson,
T. Harden,
Z. Mekuria,
L. Peak,
A. Roy,
K. Strother &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2017-08-01
Earliest release date
2023-08-02
Sampling location
USA (Ouachita, Louisiana)
Isolate name
WNV/mosquito/Ouachita-LA-USA/2017-08-01/W1303
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
OQ721842.1
BioProject accession
PRJNA472981
Host
Host
southern house mosquito (Culex quinquefasciatus)
Submission details
Submission ID
OQ721842.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-06 18:28:28 UTC
Date released
2026-07-06 18:50:29 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000L53G.1.embl
Alignment and QC
Total SNPs
83
Total ambiguous nucs
1
Total unknown nucs
544
Length
10302 (88.5%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
A
70
S
NS2A:
T
52
I
NS2A:
L
95
V
NS2B:
A
103
V
NS3:
T
249
P
NS3:
S
334
T
NS3:
I
356
T
NS3:
P
466
S
NS3:
R
561
Q
NS4A:
V
85
A
NS4B:
S
14
I
NS4B:
I
240
M
NS5:
K
177
R
NS5:
I
520
V
env:
K
93
R
env:
T
126
I
env:
I
159
A
env:
M
240
I
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
T
348
C
A
630
G
A
939
G
C
954
T
C
1371
A
A
1401
G
T
1442
C
C
1465
T
G
1686
A
T
1965
C
A
2097
C
C
2371
T
C
2466
T
T
2475
C
T
2607
C
G
2677
T
T
3138
C
C
3504
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
A
70
S
NS2A
NS2A:
T
52
I
NS2A:
L
95
V
NS3
NS3:
S
334
T
NS3:
P
466
S
NS3:
R
561
Q
NS4B
NS4B:
S
14
I
NS4B:
I
240
M
NS5
NS5:
I
520
V
env
env:
V
159
A
env:
L
167
F
env:
M
240
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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