This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L53G.1

USA/LOC_000L53G.1/2015-09-24
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2015-09-24
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/bird/Sacramento-CA-USA/2015-09-24/W0767

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Submission details

Submission ID
OQ721840.1
Submitting group
Date submitted
2026-08-17 10:48:01 UTC
Date released
2026-08-17 11:11:59 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
85
Total unknown nucs
134
Length
10302 (92.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2A:D4E
  • NS2B:A103V
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS3:I435M
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T477C
  • C567T
  • T570C
  • A630G
  • C660T
  • C1089T
  • T1442C
  • C1465T
  • T1656C
  • G1752A
  • C1953T
  • G2031A
  • C2466T
  • T2550C
  • T2619C
  • T2664C
  • G2793A
  • G3387A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS2A

  • NS2A:D4E

NS3

  • NS3:I162M
  • NS3:I435M

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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