This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L53G.1

Display Name: United_Kingdom/LOC_000L53G.1/2022-11
M. Schilling, B. Dunkel, T. Floyd, D. Hicks, A. Nunez, F. Steinbach, A. J. Folly & N. Johnson

Sample details

Collection date
2022-11
Collection date (lower bound)
2022-11-01
Collection date (upper bound)
2022-11-30
Earliest release date
2024-04-25
Collection country
United Kingdom
Isolate name
WNV-SC-2022-08

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:03insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Animal and Plant Health Agency, Virology

INSDC

NCBI release date
2024-04-25
NCBI update date
2024-04-25
INSDC accession

Host

Host taxon id
Host name scientific
Equus caballus

Alignment and QC metrics

Length
624
Total SNPs
32
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
5.66%
Total stop codons
0

Submission details

Submission ID
OQ857020.1
Submitting group
Date submitted
2026-02-13 18:03:28 UTC
Date released
2026-02-13 18:20:04 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C8106T
  • C8130T
  • C8220T
  • T8235C
  • G8247A
  • G8271A
  • A8277G
  • G8292A
  • C8296T
  • C8301T
  • T8340C
  • G8346A
  • T8373C
  • T8382C
  • C8388T
  • C8400T
  • A8403G
  • A8409G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:K280R
    • Deletions
    None
    Insertions
    None

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