This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L4DX.1

USA/LOC_000L4DX.1/2005-09-01
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2005-09-01
Earliest release date
2023-08-02
Sampling location
USA (Kern, California)
Isolate name
WNV/bird/Kern-CA-USA/2005-09-01/W0271

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Submission details

Submission ID
OQ721820.1
Submitting group
Date submitted
2026-08-21 17:20:38 UTC
Date released
2026-08-21 17:44:07 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
40
Total unknown nucs
89
Length
10302 (92.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:A106T
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • A1320G
  • T1442C
  • C1465T
  • C1671T
  • C1974T
  • A2184G
  • C2466T
  • G2661A
  • G2785A
  • T2835C
  • T3228C
  • T3399C
  • C4107T
  • A4146G
  • T4212G
  • C4803T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:A106T

NS4A

  • NS4A:A85T

NS5

  • NS5:K314R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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