This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L4DX.1

Display Name: South_Africa/LOC_000L4DX.1/2008
M. Venter, M. A. Pretorius, J. A. Fuller, E. M. Botha, M. Rakgotho, V. Stivaktas, S. van Niekerk, M. Romito & J. Williams

Submission details

Submission ID
KY176718.1
Submitting group
Date submitted
2025-07-04 13:34:16 UTC
Date released
2025-07-04 13:37:36 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Pretoria, Centre for Viral Zoonoses

Alignment and QC metrics

Completeness
2.01%
Frame shifts
NS5:473-905(nt:9097-10395)
Length
215
Total ambiguous nucs
0
Total deleted nucs
7
Total frame shifts
1
Total inserted nucs
0
Total SNPs
35
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2017-12-31
Collection subdivision level 1
Gauteng
Collection country
South Africa
Collection date
2008
Collection date (lower bound)
2008-01-01
Collection date (upper bound)
2008-12-31
Isolate name
HS123_08

Host

Host name scientific
Equus caballus
Host taxon id

INSDC

INSDC accession
NCBI release date
2017-12-31
NCBI update date
2017-12-31

Lineage

Lineage
2

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T9108C
  • C9123G
  • A9126G
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • T9204A
  • C9207T
  • G9210A
  • G9216A
  • C9219A
  • C9222G
    • Deletions
    9090-9096
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    NS5:471, NS5:472
    Insertions
    None

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