This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L4DX.1

USA/LOC_000L4DX.1/2017-10-05
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Bolton, A. Mathewson, C. Fredette, R. Lovell, A. Kutschke & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-10-05
Earliest release date
2023-08-02
Sampling location
USA (Rockingham, New Hampshire)
Isolate name
WNV/mosquito/Rockingham-NH-USA/2017-10-05/W0962

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721855.1
Submitting group
Date submitted
2026-10-21 20:23:11 UTC
Date released
2026-10-21 20:37:03 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
94
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:I26V
  • NS2B:D65N
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:A860T
  • NS5:E895G
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • C435T
  • A630G
  • T666C
  • T825C
  • C885T
  • A981T
  • C1077T
  • T1143C
  • T1206C
  • C1377T
  • T1442C
  • C1465T
  • C1467T
  • G1662A
  • C1750T
  • C2109T
  • G2121A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I26V
  • NS2B:D65N

NS4B

  • NS4B:I240M

NS5

  • NS5:A860T
  • NS5:E895G

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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