This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L4DX.1

Display Name: USA/LOC_000L4DX.1/2020-08-18
N. Grubaugh, N. Matteson, K. Gangavarupa, R. Smith & K. Andersen

Submission details

Submission ID
OQ721827.1
Submitting group
Date submitted
2025-07-07 22:44:31 UTC
Date released
2025-07-07 22:51:30 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-07 22:44insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

Bioproject accession
INSDC accession
NCBI release date
2023-08-02
NCBI update date
2023-08-02

Alignment and QC metrics

Completeness
93.41%
Length
10302
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
90
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2023-08-02
Collection subdivision level 1
Polk, Iowa
Collection country
USA
Collection date
2020-08-18
Collection date (lower bound)
2020-08-18
Collection date (upper bound)
2020-08-18

Host

Host name scientific
Culex pipiens
Host taxon id

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • C711T
  • T928C
  • T1092C
  • T1442C
  • C1465T
  • T1563C
  • G1662A
  • C1750T
  • G1989A
  • C2109T
  • C2304T
  • C2323T
  • C2466T
  • G2937A
  • C3066T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:F155L
    • Deletions
    None
    Insertions
    None

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