This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L45D.1

Display Name: Spain/LOC_000L45D.1/2021-08-30
Varga, Z.; Mari, R. B.; Iranzo, J. R.; Kurucz, K.; Toth, E. G.; Zana, B.; Zeghbib, S.; Gorfol, T.; Jakab, F.; Kemenesi, G.; Urban, P.

Submission details

Submission ID
OR472391.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-23 19:43:09 UTC
Date released
2024-12-23 19:50:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-23 19:43insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
University of Pecs, National Laboratory of Virology

Alignment states and QC metrics

Completeness
99.38%
Length
10962
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
484
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2023-10-10
Collection country
Spain
Collection date
2021-08-30
Collection date (lower bound)
2021-08-30
Collection date (upper bound)
2021-08-30
Isolate name
8/1

Host

Host name scientific
Anopheles atroparvus
Host taxon id
41427

INSDC

INSDC accession
OR472391.1
NCBI release date
2023-10-10
NCBI update date
2023-10-10

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • T195A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C381T
  • C445A
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
    • Deletions
    None
    Insertions
    ins_10492:A

    Amino acid mutations

    Substitutions

    NS1

  • NS1:A70S
  • NS1:K170R

    • NS2A

  • NS2A:G211R

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:A177V
  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K41R
  • NS5:R422K

    • capsid

  • capsid:A52T
  • capsid:L117M

    • env

  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None