This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L45D.1

Display Name: USA/LOC_000L45D.1/2017-10-05
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Bolton, A. Mathewson, C. Fredette, R. Lovell, A. Kutschke & K. Andersen

Sample details

Collection date
2017-10-05
Collection date (lower bound)
2017-10-05
Collection date (upper bound)
2017-10-05
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Rockingham, New Hampshire

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-15 15:25insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culiseta melanura

Alignment and QC metrics

Length
10302
Total SNPs
94
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721855.1
Submitting group
Date submitted
2025-10-15 15:24:56 UTC
Date released
2025-10-15 15:40:40 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • T666C
  • T825C
  • C885T
  • A981T
  • C1077T
  • T1143C
  • T1206C
  • C1377T
  • T1442C
  • C1465T
  • C1467T
  • G1662A
  • C1750T
  • C2109T
  • G2121A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I26V
  • NS2B:D65N

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:A860T
  • NS5:E895G

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue