This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
West Nile Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Sudan
Test organism (without alignment)
West Nile Virus
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LOC_000L45D.1
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Display Name: Spain/LOC_000L45D.1/2021-08-30
Varga,
Z.; Mari,
R. B.; Iranzo,
J. R.; Kurucz,
K.; Toth,
E. G.; Zana,
B.; Zeghbib,
S.; Gorfol,
T.; Jakab,
F.; Kemenesi,
G.; Urban,
P.
Submission details
Submission ID
OR472391.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-23 19:43:09 UTC
Date released
2024-12-23 19:50:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-23 19:43
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Pecs, National Laboratory of Virology
Alignment states and QC metrics
Completeness
99.38%
Length
10962
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
484
Total stop codons
0
Total unknown nucs
0
Sample details
Earliest release date
2023-10-10
Collection country
Spain
Collection date
2021-08-30
Collection date (lower bound)
2021-08-30
Collection date (upper bound)
2021-08-30
Isolate name
8/1
Host
Host name scientific
Anopheles atroparvus
Host taxon id
41427
INSDC
INSDC accession
OR472391.1
NCBI release date
2023-10-10
NCBI update date
2023-10-10
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
T
195
A
T
234
C
G
250
A
C
282
T
A
288
G
G
354
A
C
381
T
C
445
A
C
483
T
G
492
A
G
495
T
C
561
T
C
600
T
T
606
C
A
630
G
T
639
C
T
642
C
C
711
T
Show more
Deletions
None
Insertions
ins_10492:A
Amino acid mutations
Substitutions
NS1
NS1:
A
70
S
NS1:
K
170
R
NS2A
NS2A:
G
211
R
NS2B
NS2B:
V
103
A
NS3
NS3:
A
177
V
NS3:
P
249
T
NS3:
T
356
I
NS3:
T
436
A
NS4A
NS4A:
A
85
V
NS4B
NS4B:
E
249
D
NS5
NS5:
K
41
R
NS5:
R
422
K
capsid
capsid:
A
52
T
capsid:
L
117
M
env
env:
I
126
T
env:
V
159
I
env:
L
167
F
Deletions
None
Insertions
None
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