This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L3XV.1

Display Name: USA/LOC_000L3XV.1/2007-07-06
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

Sample details

Collection date
2007-07-06
Collection date (lower bound)
2007-07-06
Collection date (upper bound)
2007-07-06
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Sacramento, California

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 07:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
49
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
318
Total frame shifts
0
Completeness
90.52%
Total stop codons
0

Submission details

Submission ID
OQ721847.1
Submitting group
Date submitted
2025-09-16 07:27:46 UTC
Date released
2025-09-16 07:39:45 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C184T
  • G294A
  • A630G
  • C660T
  • T1407C
  • T1442C
  • C1465T
  • G1815A
  • C2466T
  • C3570T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • G5280A
  • G5421A
  • C6138T
  • A6204G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS4A

  • NS4A:K124R

    • NS5

  • NS5:K314R
  • NS5:I878V

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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