This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L3XV.1

USA/LOC_000L3XV.1/2015-01-01
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Bradway, B. Wolking, M. Francis & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2015-01-01
Earliest release date
2023-08-02
Sampling location
USA (Kittitas, Washington)
Isolate name
WNV/bird/Kittitas-WA-USA/2015-01-01/W0921

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721803.1
Submitting group
Date submitted
2026-08-17 10:48:01 UTC
Date released
2026-08-17 11:11:59 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
73
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:L55I
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:R41K
  • NS4A:V85T
  • NS4B:V91I
  • NS4B:S94P
  • NS5:K177R
  • NS5:K314R
  • NS5:N419K
  • NS5:I520V
  • capsid:M34I
  • env:K44R
  • env:K93R
  • env:T123A
  • env:T126I
  • env:I159A
  • prM:V153A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G198T
  • A324T
  • C600T
  • A630G
  • C660T
  • G792A
  • T923C
  • A1097G
  • A1320G
  • C1326T
  • A1333G
  • T1442C
  • C1465T
  • C1974T
  • T2103C
  • C2448T
  • C2466T
  • G2661A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:L55I

NS4A

  • NS4A:R41K
  • NS4A:A85T

NS4B

  • NS4B:V91I
  • NS4B:S94P

NS5

  • NS5:K314R
  • NS5:N419K
  • NS5:I520V

capsid

  • capsid:M34I

env

  • env:K44R
  • env:T123A
  • env:V159A
  • env:L167F

prM

  • prM:V153A
Deletions
N/A
Insertions
N/A

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