This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L3R7.1

Display Name: USA/LOC_000L3R7.1/2007-10-25
N. Grubaugh, N. Matteson, K. Gangavarupa, N. Gurfield, S. Grewal, J. Tuncap & K. Andersen

Sample details

Collection date
2007-10-25
Collection date (lower bound)
2007-10-25
Collection date (upper bound)
2007-10-25
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
San Diego, California

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-15 15:25insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Accipitridae

Alignment and QC metrics

Length
10302
Total SNPs
49
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
362
Total frame shifts
0
Completeness
90.13%
Total stop codons
0

Submission details

Submission ID
OQ721841.1
Submitting group
Date submitted
2025-10-15 15:24:56 UTC
Date released
2025-10-15 15:40:40 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T428G
  • A630G
  • C660T
  • T1032C
  • T1442C
  • C1465T
  • A1683G
  • G2257A
  • C2466T
  • T2727C
  • C3570T
  • C3771T
  • C4107T
  • A4146G
  • T4212C
  • C4272T
  • G4525T
  • T4542C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2B

  • NS2B:V103F

    • NS4B

  • NS4B:F119L

    • capsid

  • capsid:I111S

    • env

  • env:V159A
  • env:L167F
  • env:V431I
    • Deletions
    None
    Insertions
    None

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