This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L3R7.1

USA/LOC_000L3R7.1/2020-08-18
N. Grubaugh, N. Matteson, K. Gangavarupa, R. Smith & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2020-08-18
Earliest release date
2023-08-02
Sampling location
USA (Polk, Iowa)
Isolate name
WNV/mosquito/Polk-IA-USA/2020-08-18/W1863

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-08 17:04insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721827.1
Submitting group
Date submitted
2026-04-08 17:04:34 UTC
Date released
2026-04-08 17:38:17 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
90
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:F155L
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • C711T
  • T928C
  • T1092C
  • T1442C
  • C1465T
  • T1563C
  • G1662A
  • C1750T
  • G1989A
  • C2109T
  • C2304T
  • C2323T
  • C2466T
  • G2937A
  • C3066T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS4B

  • NS4B:I240M

env

  • env:V159A
  • env:L167F

prM

  • prM:F155L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue