This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KYV6.1

Display Name: USA/LOC_000KYV6.1/2011-07-27
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

Submission details

Submission ID
KX547457.1
Submitting group
Date submitted
2025-07-04 13:34:16 UTC
Date released
2025-07-04 13:37:36 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
J. Craig Venter Institute

INSDC

Bioproject accession
INSDC accession
NCBI release date
2016-08-02
NCBI update date
2016-08-02

Alignment and QC metrics

Completeness
89.16%
Frame shifts
NS3:324-619(nt:5579-6468)
Length
10785
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
1
Total inserted nucs
0
Total SNPs
65
Total stop codons
0
Total unknown nucs
954

Sample details

Earliest release date
2016-08-02
Collection subdivision level 1
Nassau Co., NY
Collection country
USA
Collection date
2011-07-27
Collection date (lower bound)
2011-07-27
Collection date (upper bound)
2011-07-27

Host

Host name scientific
Culex
Host taxon id

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • T234C
  • C340T
  • A407G
  • C435T
  • A630G
  • C937T
  • C1170T
  • G1191A
  • C1227T
  • C1317T
  • T1442C
  • C1465T
  • G1662A
  • C1707T
  • C1750T
  • C2304T
  • C2466T
    • Deletions
    5578, 10451
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:V120I

    • NS5

  • NS5:V207I

    • capsid

  • capsid:K104R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    NS3:323
    Insertions
    None

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