This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KYV6.1

USA/LOC_000KYV6.1/2017-07-06
N. Grubaugh, N. Matteson, K. Gangavarupa, N. Gurfield, S. Grewal, J. Tuncap & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-07-06
Earliest release date
2023-08-02
Sampling location
USA (San Diego, California)
Isolate name
WNV/bird/San_Diego-CA-USA/2017-07-06/W0591

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721639.1
Submitting group
Date submitted
2026-07-06 10:11:54 UTC
Date released
2026-07-06 10:32:12 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
86
Total unknown nucs
736
Length
10302 (86.7%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:K343R
  • NS2B:T34S
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS3:S467L
  • NS4A:V85A
  • NS5:K177R
  • NS5:S292L
  • capsid:T109A
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T348C
  • A421G
  • T477C
  • A630G
  • C660T
  • C732T
  • C816T
  • T1442C
  • G1455A
  • C1465T
  • A1566G
  • C1569T
  • T2250C
  • C2454T
  • C2466T
  • T2952A
  • T3160C
  • A3497G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:K343R

NS2B

  • NS2B:T34S

NS3

  • NS3:I162M
  • NS3:S467L

NS5

  • NS5:S292L

capsid

  • capsid:T109A

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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