This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KVW7.1

USA/LOC_000KVW7.1/2017-10-05
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Bolton, A. Mathewson, C. Fredette, R. Lovell, A. Kutschke & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-10-05
Earliest release date
2023-08-02
Sampling location
USA (Rockingham, New Hampshire)
Isolate name
WNV/mosquito/Rockingham-NH-USA/2017-10-05/W0961

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-22 16:11insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721567.1
Submitting group
Date submitted
2026-04-22 16:11:26 UTC
Date released
2026-04-22 16:53:22 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
69
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:E180D
  • NS3:T249P
  • NS3:I356T
  • NS3:I435L
  • NS4A:V85A
  • NS4B:I240M
  • NS5:D36N
  • NS5:K177R
  • env:A51T
  • env:K93R
  • env:T126I
  • env:I159A
  • env:F435I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G237A
  • C435T
  • A507G
  • T570C
  • A630G
  • G1117A
  • A1128G
  • C1308T
  • T1442C
  • C1465T
  • C1560T
  • A1920G
  • C1953T
  • C2127T
  • C2218T
  • G2265T
  • T2269A
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:E180D
  • NS3:I435L

NS4B

  • NS4B:I240M

NS5

  • NS5:D36N

env

  • env:A51T
  • env:V159A
  • env:L167F
  • env:F435I
Deletions
N/A
Insertions
N/A

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