This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KVW7.1

USA/LOC_000KVW7.1/2015-09-22
N. Grubaugh, N. Matteson, K. Gangavarupa, N. Gurfield, S. Grewal, J. Tuncap & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2015-09-22
Earliest release date
2023-08-02
Sampling location
USA (San Diego, California)
Isolate name
WNV/bird/San_Diego-CA-USA/2015-09-22/W0570

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-17 17:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721571.1
Submitting group
Date submitted
2026-02-17 17:37:27 UTC
Date released
2026-02-17 17:59:21 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
84
Total unknown nucs
89
Length
10302 (92.6%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • T850C
  • G1098A
  • G1185A
  • A1320G
  • T1442C
  • C1465T
  • C1470T
  • G1485A
  • C1773T
  • C1974T
  • C2466T
  • C2574T
  • A2847G
  • T3093C
  • T3399C
  • A3516C
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:Q349H

    • NS2A

  • NS2A:I37V
  • NS2A:I39L

    • NS4A

  • NS4A:A85T
  • NS4A:K124R

    • NS5

  • NS5:N306S
  • NS5:K314R
  • NS5:S844L
  • NS5:A860T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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