This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KVW7.1

USA/LOC_000KVW7.1/2018-01-01
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Mulrooney, M. Pastey, J. Sanders, A. Hunkapiller, N. Lawler, S. Greene & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-01-01
Earliest release date
2023-08-02
Sampling location
USA (Morrow, Oregon)
Isolate name
WNV/bird/Morrow-OR-USA/2018-01-01/W0949

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-05 15:31insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Submission details

Submission ID
OQ721546.1
Submitting group
Date submitted
2026-06-05 15:31:35 UTC
Date released
2026-06-05 15:49:21 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
73
Total unknown nucs
59
Length
10302 (92.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:T105I
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:R41K
  • NS4A:V85T
  • NS5:V49A
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T123A
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C600T
  • A630G
  • C660T
  • G792A
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • C1974T
  • T2103C
  • C2187T
  • C2274A
  • T2367A
  • C2448T
  • C2466T
  • G2661A
  • C2783T
  • T3093C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T105I

NS4A

  • NS4A:R41K
  • NS4A:A85T

NS5

  • NS5:V49A
  • NS5:K314R

env

  • env:T123A
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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