This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KVW7.1

Display Name: USA/LOC_000KVW7.1/2002-08-09
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Neitzel & K. Andersen

Sample details

Collection date
2002-08-09
Collection date (lower bound)
2002-08-09
Collection date (upper bound)
2002-08-09
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Ramsey, Minnesota

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Corvus

Alignment and QC metrics

Length
10302
Total SNPs
30
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
695
Total frame shifts
0
Frame shifts
[]
Completeness
87.11%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
OQ721569.1
Submitting group
Date submitted
2025-12-05 17:40:35 UTC
Date released
2025-12-05 18:02:08 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C210T
  • A630G
  • C660T
  • T1442C
  • C1465T
  • C2466T
  • C4107T
  • A4146G
  • G4536A
  • C4803T
  • G5280A
  • T5805C
  • G5873A
  • C6007T
  • T6033C
  • T6405C
  • C6426T
  • A6645G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:S421N
  • NS3:P466S

    • NS4A

  • NS4A:A85T

    • NS4B

  • NS4B:T157M

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue