This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KV00.1

USA/LOC_000KV00.1/2018-07-17
N. Grubaugh, N. Matteson, K. Gangavarupa, L. Garrett, K. Sohner, J. Scott & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-07-17
Earliest release date
2023-08-02
Sampling location
USA (Summit, Ohio)
Isolate name
WNV/bird/Summit-OH-USA/2018-07-17/W0865

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-17 13:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Submission details

Submission ID
OQ721516.1
Submitting group
Date submitted
2026-06-17 13:00:11 UTC
Date released
2026-06-17 13:19:14 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
87
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:A55T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K105R
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V140A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T348C
  • T609C
  • A630G
  • C783T
  • C807T
  • T884C
  • G918A
  • C990T
  • T1305C
  • A1401G
  • T1442C
  • C1465T
  • T1872C
  • T1923C
  • T1965C
  • C1974T
  • A2097C
  • C2371T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4A

  • NS4A:A55T

NS4B

  • NS4B:S14I

NS5

  • NS5:K105R

env

  • env:V159A
  • env:L167F

prM

  • prM:V140A
Deletions
N/A
Insertions
N/A

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