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LOC_000KV00.1
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Download metadata TSV
USA/LOC_000KV00.1/2015-08-24
N. Grubaugh,
N. Matteson,
K. Gangavarupa,
G. Ebel,
R. Murrieta,
J. Fauver,
M. Young &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2015-08-24
Earliest release date
2023-08-02
Sampling location
USA (Larimer, Colorado)
Isolate name
WNV/mosquito/Larimer-CO-USA/2015-08-24/W1813
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-23 15:59
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
OQ721541.1
BioProject accession
PRJNA472981
Host
Host
Culex pipiens
Submission details
Submission ID
OQ721541.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-23 15:59:42 UTC
Date released
2026-03-23 16:16:03 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000KV00.1.embl
Alignment and QC
Total SNPs
85
Total unknown nucs
39
Length
10302 (93.1%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
I
8
V
NS1:
I
236
V
NS2A:
Y
1
H
NS2A:
R
188
K
NS2B:
A
103
V
NS3:
T
249
P
NS3:
I
356
T
NS3:
I
462
V
NS4A:
V
85
A
NS5:
A
39
V
NS5:
V
49
I
NS5:
K
177
R
NS5:
K
314
R
NS5:
T
574
A
capsid:
K
104
R
env:
K
93
R
env:
T
126
I
env:
I
159
A
env:
V
304
I
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
204
T
C
340
T
A
407
G
C
435
T
T
606
C
T
618
C
A
630
G
C
969
T
C
1065
T
C
1170
T
T
1442
C
C
1465
T
G
1662
A
C
1750
T
G
1876
A
C
1911
T
C
2304
T
C
2466
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
I
8
V
NS1:
I
236
V
NS2A
NS2A:
Y
1
H
NS2A:
R
188
K
NS3
NS3:
I
462
V
NS5
NS5:
A
39
V
NS5:
V
49
I
NS5:
K
314
R
NS5:
T
574
A
capsid
capsid:
K
104
R
env
env:
V
159
A
env:
L
167
F
env:
V
304
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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