This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KV00.1

USA/LOC_000KV00.1/2014-08-11
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2014-08-11
Earliest release date
2023-08-02
Sampling location
USA (Larimer, Colorado)
Isolate name
WNV/mosquito/Larimer-CO-USA/2014-08-11/W1798

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721515.1
Submitting group
Date submitted
2026-08-17 10:48:01 UTC
Date released
2026-08-17 11:11:59 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
44
Total ambiguous nucs
2
Total unknown nucs
1167
Length
10302 (82.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:V601A
  • NS4A:V85A
  • NS5:K177R
  • capsid:K104R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:L312F
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A407G
  • C435T
  • A630G
  • C1065T
  • C1170T
  • T1442C
  • C1465T
  • G1680A
  • T1779C
  • C1900T
  • C2304T
  • C2323T
  • G2361A
  • C2466T
  • G2661A
  • T3528C
  • C3969T
  • C4107T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:V601A

capsid

  • capsid:K104R

env

  • env:V159A
  • env:L167F
  • env:L312F
Deletions
N/A
Insertions
N/A

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