This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KT10.1

Display Name: USA/LOC_000KT10.1/2017-07-31
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

Sample details

Collection date
2017-07-31
Collection date (lower bound)
2017-07-31
Collection date (upper bound)
2017-07-31
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
St. Tammany, Louisiana

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-30 12:14insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex quinquefasciatus

Alignment and QC metrics

Length
10302
Total SNPs
58
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
1
Total unknown nucs
2794
Total frame shifts
0
Completeness
68.07%
Total stop codons
0

Submission details

Submission ID
OQ721477.1
Submitting group
Date submitted
2025-10-30 12:14:00 UTC
Date released
2025-10-30 12:29:02 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T158C
  • C292T
  • A630G
  • C732T
  • G780T
  • C849T
  • A879G
  • C1209A
  • A1401G
  • T1442C
  • C1465T
  • C2371T
  • C2466T
  • C2593T
  • A2861G
  • T3228C
  • T3399C
  • T3537C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:N131S

    • NS2A

  • NS2A:R122H
  • NS2A:R188K
  • NS2A:S192I

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:M21T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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