This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KT10.1

Display Name: USA/LOC_000KT10.1/2017-07-31
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

Submission details

Submission ID
OQ721477.1
Submitting group
Date submitted
2025-07-18 15:33:42 UTC
Date released
2025-07-18 15:41:11 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:33insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

Bioproject accession
INSDC accession
NCBI release date
2023-08-02
NCBI update date
2023-08-02

Alignment and QC metrics

Completeness
68.07%
Length
10302
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
58
Total stop codons
0
Total unknown nucs
2794

Sample details

Earliest release date
2023-08-02
Collection subdivision level 1
St. Tammany, Louisiana
Collection country
USA
Collection date
2017-07-31
Collection date (lower bound)
2017-07-31
Collection date (upper bound)
2017-07-31

Host

Host name scientific
Culex quinquefasciatus
Host taxon id

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T158C
  • C292T
  • A630G
  • C732T
  • G780T
  • C849T
  • A879G
  • C1209A
  • A1401G
  • T1442C
  • C1465T
  • C2371T
  • C2466T
  • C2593T
  • A2861G
  • T3228C
  • T3399C
  • T3537C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:N131S

    • NS2A

  • NS2A:R122H
  • NS2A:R188K
  • NS2A:S192I

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:M21T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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