This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KT10.1

Display Name: USA/LOC_000KT10.1/2005-08-01
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Neitzel & K. Andersen

Sample details

Collection date
2005-08-01
Collection date (lower bound)
2005-08-01
Collection date (upper bound)
2005-08-01
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Washington, Minnesota

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Alignment and QC metrics

Length
10302
Total SNPs
43
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
209
Total frame shifts
0
Frame shifts
[]
Completeness
91.51%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
OQ721472.1
Submitting group
Date submitted
2025-12-05 17:40:35 UTC
Date released
2025-12-05 18:02:08 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C435T
  • A630G
  • T642C
  • G951A
  • T1442C
  • C1465T
  • C1467T
  • C1533T
  • C2370T
  • C2466T
  • A2997G
  • T3351C
  • T3858C
  • C4107T
  • A4146G
  • C4189T
  • C4302T
  • C4563T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2B

  • NS2B:V119A

    • NS5

  • NS5:H42Y

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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