This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KT10.1

Display Name: USA/LOC_000KT10.1/2015-07-16
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

Sample details

Collection date
2015-07-16
Collection date (lower bound)
2015-07-16
Collection date (upper bound)
2015-07-16
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Yolo, California

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
82
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
432
Total frame shifts
0
Completeness
89.49%
Total stop codons
0

Submission details

Submission ID
OQ721464.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:41:13 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A332G
  • T477C
  • A630G
  • C660T
  • C732T
  • T1442C
  • G1455A
  • C1465T
  • A1566G
  • C1569T
  • T1971C
  • T2250C
  • C2466T
  • C2496T
  • G2706A
  • T3160C
  • C3570T
  • G3816A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS2B

  • NS2B:T34S

    • NS3

  • NS3:I162M

    • NS4B

  • NS4B:M29V
  • NS4B:V91I

    • NS5

  • NS5:K503R

    • capsid

  • capsid:K79R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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