This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KT10.1

Display Name: USA/LOC_000KT10.1/2005-08-11
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

Submission details

Submission ID
KX547259.1
Submitting group
Date submitted
2025-07-04 13:34:11 UTC
Date released
2025-07-04 13:37:36 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-04 13:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
J. Craig Venter Institute

INSDC

Bioproject accession
INSDC accession
NCBI release date
2016-08-02
NCBI update date
2016-08-02

Alignment and QC metrics

Completeness
97.81%
Length
10787
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
32
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2016-08-02
Collection subdivision level 1
Niagara Co., NY
Collection country
USA
Collection date
2005-08-11
Collection date (lower bound)
2005-08-11
Collection date (upper bound)
2005-08-11

Host

Host name scientific
Cyanocitta cristata
Host taxon id

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A538G
  • A630G
  • C660T
  • T1442C
  • C1465T
  • T2190C
  • C2466T
  • C4107T
  • A4146G
  • T4194C
  • C4803T
  • C4920T
  • G5280A
  • G5436A
  • C5478T
  • C5940T
  • C6138T
  • C6238T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:K647R

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:I25V
    • Deletions
    None
    Insertions
    None

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