This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRX9.1

Display Name: USA/LOC_000KRX9.1/2015-01-01
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Bradway, B. Wolking, M. Francis & K. Andersen

Sample details

Collection date
2015-01-01
Collection date (lower bound)
2015-01-01
Collection date (upper bound)
2015-01-01
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Grant, Washington

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-12 18:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Corvidae

Alignment and QC metrics

Length
10302
Total SNPs
67
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721436.1
Submitting group
Date submitted
2025-11-12 18:19:25 UTC
Date released
2025-11-12 18:34:03 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C600T
  • A630G
  • C660T
  • G792A
  • C1266T
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • T1488C
  • A1621G
  • C1974T
  • T2103C
  • C2448T
  • C2466T
  • G2661A
  • A3114G
  • T3228C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS3

  • NS3:S331A

    • NS4A

  • NS4A:R41K
  • NS4A:A85T

    • NS5

  • NS5:K314R

    • env

  • env:T123A
  • env:V159A
  • env:L167F
  • env:M219V
    • Deletions
    None
    Insertions
    None

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