This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRX9.1

USA/LOC_000KRX9.1/2018-07-17
N. Grubaugh, N. Matteson, K. Gangavarupa, L. Garrett, K. Sohner, J. Scott & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-07-17
Earliest release date
2023-08-02
Sampling location
USA (Lorain, Ohio)
Isolate name
WNV/bird/Lorain-OH-USA/2018-07-17/W0885

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-03 13:47insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721605.1
Submitting group
Date submitted
2026-03-03 13:47:06 UTC
Date released
2026-03-03 14:03:34 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
95
Total unknown nucs
231
Length
10302 (91.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:E442K
  • env:K93R
  • env:T126I
  • env:I159A
  • env:A161V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A156G
  • C340T
  • C435T
  • A630G
  • T735C
  • T1442C
  • C1448T
  • C1465T
  • C1620T
  • G1662A
  • C1750T
  • G1857A
  • G1938A
  • C2011T
  • C2109T
  • C2304T
  • A2310G
  • C2371T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS4B

  • NS4B:I240M

NS5

  • NS5:E442K

env

  • env:V159A
  • env:A161V
  • env:L167F
Deletions
N/A
Insertions
N/A

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