This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRX9.1

Display Name: USA/LOC_000KRX9.1/2018-07-25
N. Grubaugh, N. Matteson, K. Gangavarupa, L. Garrett, K. Sohner, J. Scott & K. Andersen

Sample details

Collection date
2018-07-25
Collection date (lower bound)
2018-07-25
Collection date (upper bound)
2018-07-25
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Lorain, Ohio

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-24 05:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Alignment and QC metrics

Length
10302
Total SNPs
95
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721428.1
Submitting group
Date submitted
2025-10-24 05:41:52 UTC
Date released
2025-10-24 05:57:26 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C255T
  • C340T
  • C435T
  • C551T
  • T609C
  • A630G
  • C963T
  • T1442C
  • C1465T
  • T1608C
  • G1662A
  • C1750T
  • T2073C
  • C2109T
  • C2304T
  • C2466T
  • C2559T
  • T2739C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:L95F
  • NS2A:V112A
  • NS2A:R188K

    • NS3

  • NS3:A553S

    • NS4B

  • NS4B:V23A
  • NS4B:I240M

    • NS5

  • NS5:L206M
  • NS5:T897A

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:A29V
    • Deletions
    None
    Insertions
    None

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