This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRAJ.1

Italy/LOC_000KRAJ.1/2013
S. Ravagnan, S. Cazzin, G. Da Rold, E. Porcellato, S. Carlin, F. Montarsi, G. Capelli, A. Schivo & I. Monne

Istituto Zooprofilattico Sperimentale delle Venezie, Parasitology department

Sample details

Collection date
2013
Earliest release date
2015-11-01
Sampling location
Italy
Isolate name
5091/13

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 14:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2015-11-01
NCBI update date
2015-11-01
INSDC accession

Host

Host

Submission details

Submission ID
KT364516.1
Submitting group
Date submitted
2026-02-21 14:53:38 UTC
Date released
2026-02-21 15:12:58 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
93
Total inserted nucs
33
Total deleted nucs
75
Total frame shifts
1
Frame shifts
NS5:839-905(nt:10193-10395)
Length
591 (5.74%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C10200T
  • C10203T
  • T10209C
  • A10212T
  • A10218G
  • C10219A
  • G10224A
  • C10230T
  • C10242T
  • C10243T
  • A10255C
  • G10258A
  • A10263C
  • C10266T
  • G10269T
  • A10275T
  • C10281T
  • G10287T
    • Deletions

    10131-10192, 10421, 10467-10470, 10487-10494
    Insertions

    ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10427:G, ins_10452:AGA, ins_10461:AG, ins_10483:GTT, ins_10501:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    N/A
    Deletions
    N/A
    Insertions
    N/A

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