This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRAJ.1

USA/LOC_000KRAJ.1/2017-07-06
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-07-06
Earliest release date
2023-08-02
Sampling location
USA (Stanislaus, California)
Isolate name
WNV/mosquito/Stanislaus-CA-USA/2017-07-06/W0241

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-19 23:33insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721303.1
Submitting group
Date submitted
2026-02-19 23:33:38 UTC
Date released
2026-02-19 23:56:14 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
98
Total unknown nucs
809
Length
10302 (86.1%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T158C
  • T477C
  • A630G
  • C660T
  • C732T
  • T891C
  • C1272T
  • T1442C
  • G1455A
  • C1465T
  • T1563C
  • A1566G
  • C1569T
  • T1971C
  • C2454T
  • G2742A
  • T3160C
  • T3522C
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS2B

  • NS2B:T34S

    • NS3

  • NS3:I162M
  • NS3:E529D

    • capsid

  • capsid:M21T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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