This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRAJ.1

Display Name: USA/LOC_000KRAJ.1/2013-07-22
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

Sample details

Collection date
2013-07-22
Collection date (lower bound)
2013-07-22
Collection date (upper bound)
2013-07-22
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Larimer, Colorado

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-07 17:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
64
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721415.1
Submitting group
Date submitted
2025-11-07 17:41:44 UTC
Date released
2025-11-07 17:56:32 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G451T
  • A630G
  • G876A
  • C1334A
  • A1401G
  • C1422T
  • T1442C
  • C1465T
  • A1500G
  • T1965C
  • C2100T
  • C2371T
  • C2466T
  • A2774G
  • C2925T
  • T3138C
  • A3391G
  • C3504T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:K102R
  • NS1:I308V

    • NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • capsid

  • capsid:A119S

    • env

  • env:T123N
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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