This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRAJ.1

Display Name: USA/LOC_000KRAJ.1/2017-09-11
N. Grubaugh, N. Matteson, K. Gangavarupa, R. Smith & K. Andersen

Sample details

Collection date
2017-09-11
Collection date (lower bound)
2017-09-11
Collection date (upper bound)
2017-09-11
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Polk, Iowa
Isolate name
WNV/mosquito/Polk-IA-USA/2017-09-11/W2011

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-20 15:55insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex restuans

Alignment and QC metrics

Length
10302
Total SNPs
99
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721401.1
Submitting group
Date submitted
2026-01-20 15:55:24 UTC
Date released
2026-01-20 16:13:33 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A332G
  • C340T
  • T375C
  • A407G
  • C435T
  • A630G
  • C762T
  • T891C
  • C963T
  • C969T
  • C1041A
  • C1056T
  • C1065T
  • T1071C
  • C1170T
  • T1368C
  • T1442C
  • C1465T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:H119Y
  • NS2A:R188K

    • NS2B

  • NS2B:V120I

    • NS3

  • NS3:H478Y

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:I33T
  • NS5:V49I

    • capsid

  • capsid:K79R
  • capsid:K104R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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