This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRAJ.1

Display Name: USA/LOC_000KRAJ.1/2009-10-22
N. Grubaugh, N. Matteson, K. Gangavarupa, N. Gurfield, S. Grewal, J. Tuncap & K. Andersen

Sample details

Collection date
2009-10-22
Collection date (lower bound)
2009-10-22
Collection date (upper bound)
2009-10-22
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
San Diego, California
Isolate name
WNV/bird/San_Diego-CA-USA/2009-10-22/W0537

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:03insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Corvus brachyrhynchos

Alignment and QC metrics

Length
10302
Total SNPs
56
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
66
Total frame shifts
0
Completeness
92.81%
Total stop codons
0

Submission details

Submission ID
OQ721395.1
Submitting group
Date submitted
2026-02-13 18:03:28 UTC
Date released
2026-02-13 18:20:04 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T339C
  • C431T
  • A630G
  • C660T
  • C1089T
  • C1317T
  • T1442C
  • C1465T
  • T1821C
  • G2257A
  • C2340T
  • G2428A
  • C2466T
  • C3118T
  • C3570T
  • C4107T
  • A4146G
  • C4176T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    capsid

  • capsid:A112V

    • env

  • env:V159A
  • env:L167F
  • env:V431I
  • env:V488I
    • Deletions
    None
    Insertions
    None

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