This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRAJ.1

USA/LOC_000KRAJ.1/2013-07-22
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2013-07-22
Earliest release date
2023-08-02
Sampling location
USA (Larimer, Colorado)
Isolate name
WNV/mosquito/Larimer-CO-USA/2013-07-22/W1755

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-27 15:36insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721415.1
Submitting group
Date submitted
2026-02-27 15:36:10 UTC
Date released
2026-02-27 15:51:26 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
64
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:K102R
  • NS1:I308V
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K177R
  • capsid:A119S
  • env:K93R
  • env:T123N
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G451T
  • A630G
  • G876A
  • C1334A
  • A1401G
  • C1422T
  • T1442C
  • C1465T
  • A1500G
  • T1965C
  • C2100T
  • C2371T
  • C2466T
  • A2774G
  • C2925T
  • T3138C
  • A3391G
  • C3504T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:K102R
  • NS1:I308V

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

capsid

  • capsid:A119S

env

  • env:T123N
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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