This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRAJ.1

Display Name: USA/LOC_000KRAJ.1/2018-08-30
N. Grubaugh, N. Matteson, K. Gangavarupa, A. Westrich, C. Blanco, R. Mansour & K. Andersen

Sample details

Collection date
2018-08-30
Collection date (lower bound)
2018-08-30
Collection date (upper bound)
2018-08-30
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Cook, Illinois

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-21 15:15insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10302
Total SNPs
99
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721400.1
Submitting group
Date submitted
2025-11-21 15:15:00 UTC
Date released
2025-11-21 15:31:36 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • T928C
  • T946C
  • A981T
  • G1035A
  • T1143C
  • T1442C
  • C1465T
  • T1656C
  • G1662A
  • A1746G
  • C1750T
  • C2109T
  • C2151T
  • C2304T
  • C2466T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:I26V

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:V258A
  • NS5:R403K
  • NS5:A860T

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:F155L
    • Deletions
    None
    Insertions
    None

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