This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KRAJ.1

Display Name: USA/LOC_000KRAJ.1/2017-07-18
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

Sample details

Collection date
2017-07-18
Collection date (lower bound)
2017-07-18
Collection date (upper bound)
2017-07-18
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Allen, Louisiana

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex quinquefasciatus

Alignment and QC metrics

Length
10302
Total SNPs
72
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
5
Total unknown nucs
2201
Total frame shifts
0
Completeness
73.41%
Total stop codons
0

Submission details

Submission ID
OQ721418.1
Submitting group
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:24:12 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C435T
  • A630G
  • A1401G
  • T1442C
  • C1465T
  • C2109T
  • T2226C
  • C2227T
  • C2304T
  • A2322G
  • C2466T
  • T2475C
  • T2550C
  • T3006C
  • T3138C
  • T3399C
  • C3504T
  • G3507T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F
  • NS2A:R188K

    • NS4A

  • NS4A:V89A

    • NS4B

  • NS4B:K8R

    • NS5

  • NS5:E367D

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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