This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KR04.1

Italy/LOC_000KR04.1/2014
S. Ravagnan, S. Cazzin, G. Da Rold, E. Porcellato, S. Carlin, F. Montarsi, G. Capelli, S. Ormelli & G. Cattoli

Istituto Zooprofilattico Sperimentale delle Venezie, Parasitology department

Sample details

Collection date
2014
Earliest release date
2015-11-01
Sampling location
Italy
Isolate name
1270/14

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2015-11-01
NCBI update date
2015-11-01
INSDC accession

Host

Host

Submission details

Submission ID
KT364506.1
Submitting group
Date submitted
2026-03-09 12:53:25 UTC
Date released
2026-03-09 13:04:51 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
130
Length
655 (5.94%)
Amino Acid Mutations from founder clade
  • NS3:T338I
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A5211G
  • A5214G
  • A5215C
  • G5217C
  • G5219A
  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:R203K
  • NS3:R215K
  • NS3:A233S
  • NS3:P249H
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:L336M
  • NS3:T338I
  • NS3:S347T
  • NS3:T356V
  • NS3:V384I
Deletions
N/A
Insertions
N/A

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