This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KR04.1

Display Name: USA/LOC_000KR04.1/2018-08-30
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Bolton, A. Mathewson, C. Fredette, R. Lovell, A. Kutschke & K. Andersen

Sample details

Collection date
2018-08-30
Collection date (lower bound)
2018-08-30
Collection date (upper bound)
2018-08-30
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Hillsborough, New Hampshire

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-07 17:41insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10302
Total SNPs
88
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721405.1
Submitting group
Date submitted
2025-11-07 17:41:44 UTC
Date released
2025-11-07 17:56:32 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C129T
  • C340T
  • C435T
  • A630G
  • T634G
  • T1155C
  • T1389A
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1821C
  • G1887A
  • C1911T
  • A2256G
  • C2304T
  • C2466T
  • T2700C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:Q324R

    • NS2A

  • NS2A:R188K

    • NS4A

  • NS4A:V89I

    • NS4B

  • NS4B:D7E
  • NS4B:V51I
  • NS4B:I240M

    • NS5

  • NS5:G227S
  • NS5:A764G

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:S57A
    • Deletions
    None
    Insertions
    None

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