This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KR04.1

USA/ARC3-12/2012-01-01
A. Grinev, C. Chancey, E. Volkova, G. Anez, D. A. Heisey, V. Winkelman, G. A. Foster, P. Williamson, S. L. Stramer & M. Rios

CBER/FDA

Sample details

Collection date
2012
Earliest release date
2016-05-25
Sampling location
USA (NE)
Isolate name
ARC3-12

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-05-25
NCBI update date
2016-05-25
INSDC accession

Host

Host

Submission details

Submission ID
KM012185.1
Submitting group
Date submitted
2026-07-01 18:03:37 UTC
Date released
2026-07-01 18:18:29 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
75
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I236V
  • NS2A:R188K
  • NS2A:M216I
  • NS2B:A103V
  • NS2B:V120I
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4A:V89A
  • NS5:V49I
  • NS5:K177R
  • capsid:K104R
  • capsid:I111T
  • capsid:V113A
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C52T
  • C205T
  • C340T
  • A407G
  • T428C
  • T434C
  • C435T
  • A459C
  • A630G
  • C849T
  • C969T
  • C1170T
  • T1442C
  • C1465T
  • G1662A
  • C1707T
  • C1750T
  • C2304T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I236V

NS2A

  • NS2A:R188K
  • NS2A:M216I

NS2B

  • NS2B:V120I

NS4A

  • NS4A:V89A

NS5

  • NS5:V49I

capsid

  • capsid:K104R
  • capsid:I111T
  • capsid:V113A

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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