This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KR04.1

USA/LOC_000KR04.1/2017-08-01
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-08-01
Earliest release date
2023-08-02
Sampling location
USA (Allen, Louisiana)
Isolate name
WNV/mosquito/Allen-LA-USA/2017-08-01/W1367

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721384.1
Submitting group
Date submitted
2026-07-06 18:28:28 UTC
Date released
2026-07-06 18:49:10 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
75
Total unknown nucs
1521
Length
10302 (79.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I194V
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS4A:V85A
  • NS4A:V89A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V22A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • C435T
  • T530C
  • A630G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • A1848G
  • C2109T
  • T2226C
  • C2227T
  • C2304T
  • A2322G
  • C2466T
  • G2544A
  • A3049G
  • C3501T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I194V

NS2A

  • NS2A:R188K

NS4A

  • NS4A:V89A

env

  • env:V159A
  • env:L167F

prM

  • prM:V22A
Deletions
N/A
Insertions
N/A

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