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LOC_000KR04.1
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Download FASTA
Download metadata TSV
USA/LOC_000KR04.1/2017-09-11
N. Grubaugh,
N. Matteson,
K. Gangavarupa,
R. Smith &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2017-09-11
Earliest release date
2023-08-02
Sampling location
USA (Polk, Iowa)
Isolate name
WNV/mosquito/Polk-IA-USA/2017-09-11/W2011
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-22 16:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
OQ721401.1
BioProject accession
PRJNA472981
Host
Host
mosquitos (Culex restuans)
Submission details
Submission ID
OQ721401.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-22 16:11:26 UTC
Date released
2026-04-22 16:53:22 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000KR04.1.embl
Alignment and QC
Total SNPs
99
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
I
236
V
NS2A:
H
119
Y
NS2A:
R
188
K
NS2B:
A
103
V
NS2B:
V
120
I
NS3:
T
249
P
NS3:
I
356
T
NS3:
H
478
Y
NS4A:
V
85
A
NS4B:
I
240
M
NS5:
I
33
T
NS5:
V
49
I
NS5:
K
177
R
capsid:
K
79
R
capsid:
K
104
R
env:
K
93
R
env:
T
126
I
env:
I
159
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
A
332
G
C
340
T
T
375
C
A
407
G
C
435
T
A
630
G
C
762
T
T
891
C
C
963
T
C
969
T
C
1041
A
C
1056
T
C
1065
T
T
1071
C
C
1170
T
T
1368
C
T
1442
C
C
1465
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
I
236
V
NS2A
NS2A:
H
119
Y
NS2A:
R
188
K
NS2B
NS2B:
V
120
I
NS3
NS3:
H
478
Y
NS4B
NS4B:
I
240
M
NS5
NS5:
I
33
T
NS5:
V
49
I
capsid
capsid:
K
79
R
capsid:
K
104
R
env
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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