This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KR04.1

USA/LOC_000KR04.1/2004-07-05
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Neitzel & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2004-07-05
Earliest release date
2023-08-02
Sampling location
USA (Ramsey, Minnesota)
Isolate name
WNV/bird/Ramsey-MN-USA/2004-07-05/W1458

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 16:50insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721387.1
Submitting group
Date submitted
2026-06-04 16:50:25 UTC
Date released
2026-06-04 17:11:55 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
39
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:E234A
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V14I
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G505A
  • A630G
  • G789A
  • A1425G
  • T1442C
  • C1465T
  • G1731A
  • T1779C
  • T1923C
  • T2073C
  • C2466T
  • C2778T
  • A2799G
  • A3423G
  • C4107T
  • A4146G
  • C4803T
  • G5280A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:E234A

NS4A

  • NS4A:A85T

env

  • env:V159A
  • env:L167F

prM

  • prM:V14I
Deletions
N/A
Insertions
N/A

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