This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KR04.1

USA/LOC_000KR04.1/2018-09-11
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Bolton, A. Mathewson, C. Fredette, R. Lovell, A. Kutschke & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-09-11
Earliest release date
2023-08-02
Sampling location
USA (Rockingham, New Hampshire)
Isolate name
WNV/mosquito/Rockingham-NH-USA/2018-09-11/W0982

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-06 10:58insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721386.1
Submitting group
Date submitted
2026-06-06 10:58:20 UTC
Date released
2026-06-06 11:18:06 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
89
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS2B:I107V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • G1095A
  • A1401G
  • T1442C
  • C1465T
  • T1965C
  • G2076A
  • A2097C
  • C2371T
  • T2394C
  • T2400C
  • C2466T
  • T2475C
  • C3009T
  • C3018T
  • T3138C
  • C3504T
  • T3537C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS2B

  • NS2B:I107V

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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