This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KR04.1

USA/BSL140-12/2012-01-01
A. Grinev, C. Chancey, E. Volkova, G. Anez, D. A. Heisey, V. Winkelman, G. A. Foster, P. Williamson, S. L. Stramer & M. Rios

CBER/FDA

Sample details

Collection date
2012
Earliest release date
2016-05-25
Sampling location
USA (GA)
Isolate name
BSL140-12

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-05-25
NCBI update date
2016-05-25
INSDC accession

Host

Host

Submission details

Submission ID
KM012180.1
Submitting group
Date submitted
2026-07-21 15:34:40 UTC
Date released
2026-07-21 15:51:51 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
60
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:V58I
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:T540A
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • C435T
  • A630G
  • T1442C
  • C1465T
  • T1554C
  • C1750T
  • A1848G
  • C2109T
  • C2304T
  • C2466T
  • T2475C
  • G3045A
  • C3501T
  • T3528C
  • G3697A
  • C3912T
  • C3969T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:V58I
  • NS2A:R188K

NS3

  • NS3:T540A

NS4B

  • NS4B:I240M

NS5

  • NS5:K314R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue