This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KR04.1

USA/LOC_000KR04.1/2009-08-20
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2009-08-20
Earliest release date
2023-08-02
Sampling location
USA (Yolo, California)
Isolate name
WNV/bird/Yolo-CA-USA/2009-08-20/W0819

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:40insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721394.1
Submitting group
Date submitted
2026-05-09 06:40:05 UTC
Date released
2026-05-09 07:19:20 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
47
Total unknown nucs
1417
Length
10302 (80.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:K503E
  • env:N52S
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:A110T
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T477C
  • A630G
  • C660T
  • G793A
  • A991C
  • A1121G
  • T1442C
  • G1455A
  • C1465T
  • G1482T
  • C4107T
  • C4129T
  • A4146G
  • C4272T
  • G4989A
  • A5097G
  • C5100T
  • G5280A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS3

  • NS3:I162M

NS5

  • NS5:K503E

env

  • env:N52S
  • env:V159A
  • env:L167F

prM

  • prM:A110T
Deletions
N/A
Insertions
N/A

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