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LOC_000KQEB.1
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Download FASTA
Download metadata TSV
USA/LOC_000KQEB.1/2018-08-09
N. Grubaugh,
N. Matteson,
K. Gangavarupa,
A. Westrich,
C. Blanco,
R. Mansour &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2018-08-09
Earliest release date
2023-08-02
Sampling location
USA (Cook, Illinois)
Isolate name
WNV/mosquito/Cook-IL-USA/2018-08-09/W1630
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-30 08:47
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
OQ721385.1
BioProject accession
PRJNA472981
Host
Host
mosquitos (Culex restuans)
Submission details
Submission ID
OQ721385.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-30 08:47:35 UTC
Date released
2026-04-30 09:17:29 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000KQEB.1.embl
Alignment and QC
Total SNPs
91
Total ambiguous nucs
2
Total unknown nucs
10
Length
10302 (93.3%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS2A:
T
52
I
NS2A:
I
85
V
NS2A:
L
95
F
NS2A:
R
188
K
NS2B:
A
103
V
NS3:
T
249
P
NS3:
S
334
T
NS3:
I
356
T
NS3:
S
454
N
NS4A:
V
85
A
NS4A:
V
89
A
NS4B:
S
14
I
NS5:
K
177
R
NS5:
T
897
I
env:
K
93
R
env:
A
120
V
env:
T
126
I
env:
I
159
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
T
606
C
A
630
G
T
960
C
C
1325
T
T
1368
C
A
1401
G
T
1442
C
C
1465
T
C
1569
T
T
1965
C
T
1998
C
A
2097
C
A
2139
G
C
2340
T
C
2371
T
C
2466
T
C
2593
T
T
3138
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS2A
NS2A:
T
52
I
NS2A:
I
85
V
NS2A:
L
95
F
NS2A:
R
188
K
NS3
NS3:
S
334
T
NS3:
S
454
N
NS4A
NS4A:
V
89
A
NS4B
NS4B:
S
14
I
NS5
NS5:
T
897
I
env
env:
A
120
V
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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