This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KQEB.1

Display Name: USA/LOC_000KQEB.1/2018-08-09
N. Grubaugh, N. Matteson, K. Gangavarupa, A. Westrich, C. Blanco, R. Mansour & K. Andersen

Sample details

Collection date
2018-08-09
Collection date (lower bound)
2018-08-09
Collection date (upper bound)
2018-08-09
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Cook, Illinois

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-19 17:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex restuans

Alignment and QC metrics

Length
10302
Total SNPs
91
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
2
Total unknown nucs
10
Total frame shifts
0
Completeness
93.30%
Total stop codons
0

Submission details

Submission ID
OQ721385.1
Submitting group
Date submitted
2025-12-19 17:43:39 UTC
Date released
2025-12-19 18:01:44 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T606C
  • A630G
  • T960C
  • C1325T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • C1569T
  • T1965C
  • T1998C
  • A2097C
  • A2139G
  • C2340T
  • C2371T
  • C2466T
  • C2593T
  • T3138C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:I85V
  • NS2A:L95F
  • NS2A:R188K

    • NS3

  • NS3:S334T
  • NS3:S454N

    • NS4A

  • NS4A:V89A

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:T897I

    • env

  • env:A120V
  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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