This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KQEB.1

Display Name: USA/LOC_000KQEB.1/2015-07-28
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

Sample details

Collection date
2015-07-28
Collection date (lower bound)
2015-07-28
Collection date (upper bound)
2015-07-28
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Yolo, California

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-16 07:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
88
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721388.1
Submitting group
Date submitted
2025-09-16 07:27:46 UTC
Date released
2025-09-16 07:39:09 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G177A
  • A288G
  • C292T
  • A630G
  • C660T
  • C762T
  • C1134T
  • T1442C
  • C1465T
  • A1518G
  • A1527G
  • T1980C
  • C2080T
  • A2205G
  • T2259C
  • C2448T
  • C2466T
  • T2637C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS2A

  • NS2A:M80V
  • NS2A:K96R

    • NS3

  • NS3:Y549H

    • NS4B

  • NS4B:F119L

    • NS5

  • NS5:T25N
  • NS5:Y887H

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue