This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KQ4X.1

USA/LOC_000KQ4X.1/2018-08-13
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Bolton, A. Mathewson, C. Fredette, R. Lovell, A. Kutschke & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-08-13
Earliest release date
2023-08-02
Sampling location
USA (Hillsborough, New Hampshire)
Isolate name
WNV/mosquito/Hillsborough-NH-USA/2018-08-13/W0968

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721375.1
Submitting group
Date submitted
2026-07-30 08:20:40 UTC
Date released
2026-07-30 08:38:15 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
93
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:A100V
  • NS4B:G104E
  • NS4B:C120F
  • NS4B:I240M
  • NS5:K177R
  • NS5:R422K
  • NS5:T897I
  • capsid:S11N
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G128A
  • C340T
  • C435T
  • A459G
  • T585C
  • A630G
  • C1047T
  • T1332C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T2046C
  • A2097T
  • C2109T
  • A2112G
  • C2304T
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS3

  • NS3:I162M

NS4B

  • NS4B:A100V
  • NS4B:G104E
  • NS4B:C120F
  • NS4B:I240M

NS5

  • NS5:R422K
  • NS5:T897I

capsid

  • capsid:S11N

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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