This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KQ4X.1

USA/LOC_000KQ4X.1/2018-07
C. J. Castro, S. Rogers & W. A. Nix

Centers for Disease Control and Prevention, Polio and Picornavirus Laboratory Branch

Sample details

Collection date
2018-07
Earliest release date
2019-11-10
Sampling location
USA (CO)
Isolate name
USA/CO/2018-23138

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-29 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-11-10
NCBI update date
2019-11-10
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MK836123.1
Submitting group
Date submitted
2026-05-29 15:59:51 UTC
Date released
2026-05-29 16:07:57 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
48
Total ambiguous nucs
1
Length
297 (4%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2603A
  • G2606A
  • T2618C
  • T2636A
  • T2648C
  • C2651T
  • T2657C
  • C2660T
  • A2669G
  • C2672T
  • C2675T
  • T2678C
  • C2690T
  • A2696G
  • A2699G
  • C2702G
  • T2720C
  • T2723C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K98E
  • VP1:R145E
Deletions
N/A
Insertions
N/A

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