This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KQ4X.1

Display Name: USA/LOC_000KQ4X.1/2017-07-20
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

Sample details

Collection date
2017-07-20
Collection date (lower bound)
2017-07-20
Collection date (upper bound)
2017-07-20
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Calcasieu, Louisiana

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex quinquefasciatus

Alignment and QC metrics

Length
10302
Total SNPs
75
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
1
Total unknown nucs
572
Total frame shifts
0
Completeness
88.21%
Total stop codons
0

Submission details

Submission ID
OQ721370.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:41:13 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • C452T
  • A630G
  • C708T
  • C1089T
  • C1122T
  • T1442C
  • C1465T
  • G1668A
  • C1750T
  • T1762C
  • C2109T
  • C2304T
  • C2466T
  • G3411A
  • C3501T
  • T3528C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K
  • NS2A:S192I

    • NS2B

  • NS2B:I26V

    • NS3

  • NS3:I213M
  • NS3:P332L
  • NS3:S334T

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:A119V

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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