This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Enterovirus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Enterovirus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000KQ4X.1
Download
Download FASTA
Download metadata TSV
France/LOC_000KQ4X.1/2012
J. L. Bailly &
J. Bailly
Universite d'Auvergne, Universite d'Auvergne, UFR Medecine, Virologie, EPIE EA4843, 28 place Henri-Dunant, F-63001 Clermont-Ferrand France
Sample details
Collection date
2012
Earliest release date
2016-09-26
Sampling location
France (Clermont-Ferrand)
Isolate name
CVA16_C_CF178036_FRA_2012
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2016-09-26
NCBI update date
2016-09-26
INSDC accession
LT617108.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
LT617108.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-28 16:13:20 UTC
Date released
2026-10-28 16:20:17 UTC
Clade
Clade CV-A16
A
Genotype
Genotype
CV-A16
Alignment and QC
Total SNPs
1610
Total inserted nucs
4
Total deleted nucs
4
Length
7412 (100%)
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
A
22
C
T
54
A
A
58
G
T
59
C
C
61
T
A
68
G
T
69
C
C
71
T
T
90
C
C
104
T
A
105
G
C
118
T
A
119
T
C
126
A
T
127
C
T
130
G
G
137
A
T
138
A
Show more
Deletions
131, 702-704
Insertions
ins_100:TTA, ins_7341:T
Amino acid substitutions
Substitutions called relative to the
U05876.1
reference
Substitutions
2A
2A:
S
66
N
2A:
R
68
K
2A:
P
73
A
2A:
S
77
T
2A:
E
85
D
2A:
V
102
S
2A:
V
121
I
2B
2B:
T
15
M
2B:
N
30
T
2B:
I
33
V
2B:
I
47
V
2B:
A
85
S
2B:
I
95
M
2C
2C:
N
13
S
2C:
N
48
S
2C:
T
96
A
2C:
Y
243
F
2C:
R
268
K
2C:
Y
318
S
2C:
I
320
V
3A
3A:
P
3
L
3A:
I
44
V
3A:
T
47
M
3A:
I
61
V
3B
3B:
T
10
A
3B:
I
15
V
3C
3C:
V
36
I
3C:
S
41
A
3C:
I
54
V
3C:
I
86
V
3C:
N
93
T
3C:
A
96
G
3C:
V
157
I
3D
3D:
V
6
M
3D:
N
37
S
3D:
H
44
T
3D:
R
46
K
3D:
D
53
N
3D:
I
74
V
3D:
K
75
T
3D:
E
76
Q
3D:
D
89
N
3D:
N
91
D
3D:
S
93
G
3D:
Q
94
K
3D:
E
105
D
3D:
T
134
V
3D:
T
135
S
3D:
S
139
T
3D:
K
140
R
3D:
I
165
L
Show more
VP1
VP1:
G
3
P
VP1:
A
11
T
VP1:
T
13
S
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
K
VP1:
T
79
A
VP1:
M
119
L
VP1:
A
139
V
VP1:
I
179
V
VP1:
L
183
M
Show more
VP2
VP2:
I
32
V
VP2:
K
43
P
VP2:
A
45
T
VP2:
I
126
V
VP2:
D
139
T
VP2:
V
149
A
VP2:
V
159
I
VP2:
N
162
H
VP2:
V
170
I
VP2:
I
215
L
VP2:
I
252
V
VP3
VP3:
A
33
P
VP3:
R
41
H
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
K
182
R
VP3:
D
183
T
VP3:
T
193
I
VP3:
S
238
T
VP4
VP4:
S
3
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue