This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KPZ7.1

USA/LOC_000KPZ7.1/2017-09-04
N. Grubaugh, N. Matteson, K. Gangavarupa, R. Smith & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-09-04
Earliest release date
2023-08-02
Sampling location
USA (Polk, Iowa)
Isolate name
WNV/mosquito/Polk-IA-USA/2017-09-04/W2009

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-16 22:14insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721360.1
Submitting group
Date submitted
2026-02-16 22:13:50 UTC
Date released
2026-02-16 22:43:05 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
88
Length
10302 (93.4%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C255T
  • C340T
  • C435T
  • A630G
  • T1155C
  • G1191A
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2070T
  • C2109T
  • C2304T
  • T2356C
  • C2466T
  • T2475C
  • A2844G
  • C3129T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:D326N

    • NS2A

  • NS2A:V58I
  • NS2A:D131G
  • NS2A:R188K

    • NS4B

  • NS4B:T111A
  • NS4B:I240M

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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