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LOC_000KPZ7.1
Download
Download FASTA
Download metadata TSV
France/LOC_000KPZ7.1/2023
C. Picard &
S. Baize
Institut Pasteur, Virology
Sample details
Collection date
2023
Earliest release date
2024-01-21
Sampling location
France
Isolate name
11AK6
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-15 20:25
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-01-21
INSDC accession L
PP067068.1
INSDC accession M
PP067080.1
INSDC accession S
PP067054.1
Submission details
Submission ID
PP067068.1.L/PP067080.1.M/PP067054.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-15 20:25:44 UTC
Date released
2026-03-15 20:38:57 UTC
Host
Host
Hyalomma marginatum
Files
annotations
LOC_000KPZ7.1.embl
Alignment and QC
Total SNPs L
243
Length L
11838 (97.8%)
Variant L
False
Total SNPs M
476
Length M
4335 (79.4%)
Variant M
False
Total SNPs S
16
Length S
1449 (80.2%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
93
A
A
220
G
T
254
A
A
298
G
C
313
T
T
340
C
T
550
A
G
553
A
C
568
T
G
619
A
C
673
T
C
727
T
A
745
G
G
766
A
T
781
C
T
790
C
C
829
T
A
859
G
Show more
M segment
A
829
G
T
838
G
A
853
G
G
856
C
T
862
C
T
868
C
C
869
T
G
871
A
T
880
C
T
883
C
C
895
T
A
897
G
C
901
T
G
904
A
A
922
G
T
935
C
T
938
C
G
943
A
Show more
S segment
A
98
T
A
311
G
G
330
A
G
339
A
C
498
T
G
588
A
G
765
A
G
852
A
T
912
C
A
987
G
G
1014
A
C
1035
T
C
1194
A
C
1292
T
T
1413
A
G
1428
A
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
D
250
E
GPC:
K
270
R
GPC:
K
288
R
GPC:
T
298
A
GPC:
K
302
E
GPC:
L
324
P
GPC:
G
336
K
GPC:
S
337
P
GPC:
V
340
A
GPC:
E
341
K
GPC:
T
348
A
GPC:
F
359
Y
GPC:
R
366
G
GPC:
V
407
I
GPC:
I
432
V
GPC:
A
433
L
GPC:
I
438
V
GPC:
T
445
A
Show more
NP
NP:
Y
20
F
NP:
K
91
R
NP:
T
418
I
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
I
223
M
RdRp:
I
261
M
RdRp:
I
505
T
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
I
783
V
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
G
1029
S
RdRp:
A
1038
T
RdRp:
G
1047
E
RdRp:
H
1161
N
RdRp:
D
1173
N
RdRp:
V
1228
I
RdRp:
N
1244
S
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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