This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KPZ7.1

Display Name: LOC_000KPZ7.1/2005-07-15
N. K. Duggal, W. K. Reisen, Y. Fang, R. M. Newman, X. Yang, G. D. Ebel, A. C. Brault & A. Brault

Sample details

Collection date
2005-07-15
Collection date (lower bound)
2005-07-15
Collection date (upper bound)
2005-07-15
Earliest release date
2015-08-08
Isolate name
SAYO_5066_2005

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases

INSDC

NCBI release date
2015-08-08
NCBI update date
2015-08-08
INSDC accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10135
Total SNPs
46
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
91.89%
Total stop codons
0

Submission details

Submission ID
KR349007.1
Submitting group
Date submitted
2025-10-13 08:42:45 UTC
Date released
2025-10-13 08:55:43 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • C906T
  • T1442C
  • C1465T
  • C2466T
  • T3357C
  • C3570T
  • C4107T
  • C4129T
  • A4146G
  • C4272T
  • G4359A
  • T4542C
  • C4803T
  • C4827T
  • G5280A
  • G5421A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS3

  • NS3:K419R

    • NS4B

  • NS4B:K8T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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