This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KPWD.1

unknown/SAYO_4723_2011/2011-01-09
N. K. Duggal, W. K. Reisen, Y. Fang, R. M. Newman, X. Yang, G. D. Ebel, A. C. Brault & A. Brault

Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases

Sample details

Collection date
2011-01-09
Earliest release date
2015-08-08
Isolate name
SAYO_4723_2011

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2015-08-08
NCBI update date
2015-08-08
INSDC accession

Host

Host

Submission details

Submission ID
KR349002.1
Submitting group
Date submitted
2026-03-09 12:53:25 UTC
Date released
2026-03-09 13:04:51 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
65
Length
10263 (93.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2A:M34R
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:F119L
  • NS5:T25N
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G177A
  • C292T
  • A630G
  • C660T
  • C762T
  • T1442C
  • C1465T
  • A1527G
  • C2080T
  • A2205G
  • T2259C
  • C2466T
  • C2652T
  • C2961T
  • C3159T
  • C3570T
  • T3626G
  • C4107T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS2A

  • NS2A:M34R

NS4B

  • NS4B:F119L

NS5

  • NS5:T25N

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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