This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KPNV.1

USA/LOC_000KPNV.1/2018-07-17
N. Grubaugh, N. Matteson, K. Gangavarupa, L. Garrett, K. Sohner, J. Scott & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-07-17
Earliest release date
2023-08-02
Sampling location
USA (Franklin, Ohio)
Isolate name
WNV/bird/Franklin-OH-USA/2018-07-17/W0845

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-13 15:40insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721359.1
Submitting group
Date submitted
2026-03-13 15:39:47 UTC
Date released
2026-03-13 16:01:14 UTC

Lineage

Lineage
1A

Files

annotations

Alignment and QC

Total SNPs
45
Total unknown nucs
891
Length
10302 (85.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:H50N
  • NS2B:A103V
  • NS3:A223P
  • NS3:T249P
  • NS3:V601A
  • NS4A:V85A
  • NS5:K177R
  • NS5:N273S
  • NS5:K314R
  • NS5:P431Q
  • env:K93R
  • env:T126I
  • env:I159A
  • env:L312F
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C1900T
  • C2304T
  • C2466T
  • C2617A
  • C3501T
  • T3528C
  • C3969T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • C4803T
  • G5278C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:H50N

NS3

  • NS3:A223P
  • NS3:V601A

NS5

  • NS5:N273S
  • NS5:K314R
  • NS5:P431Q

env

  • env:V159A
  • env:L167F
  • env:L312F
Deletions
N/A
Insertions
N/A

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