This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KPNV.1

Display Name: USA/LOC_000KPNV.1/2018-07-17
N. Grubaugh, N. Matteson, K. Gangavarupa, L. Garrett, K. Sohner, J. Scott & K. Andersen

Sample details

Collection date
2018-07-17
Collection date (lower bound)
2018-07-17
Collection date (upper bound)
2018-07-17
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Franklin, Ohio

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-27 12:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Alignment and QC metrics

Length
10302
Total SNPs
45
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
891
Total frame shifts
0
Completeness
85.33%
Total stop codons
0

Submission details

Submission ID
OQ721359.1
Submitting group
Date submitted
2025-11-27 12:19:03 UTC
Date released
2025-11-27 12:34:17 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C1900T
  • C2304T
  • C2466T
  • C2617A
  • C3501T
  • T3528C
  • C3969T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • C4803T
  • G5278C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:H50N

    • NS3

  • NS3:A223P
  • NS3:V601A

    • NS5

  • NS5:N273S
  • NS5:K314R
  • NS5:P431Q

    • env

  • env:V159A
  • env:L167F
  • env:L312F
    • Deletions
    None
    Insertions
    None

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