This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KPNV.1

Display Name: USA/LOC_000KPNV.1/2017-08-21
N. Grubaugh, N. Matteson, K. Gangavarupa, R. Smith & K. Andersen

Submission details

Submission ID
OQ721362.1
Submitting group
Date submitted
2025-07-18 15:33:42 UTC
Date released
2025-07-18 15:41:11 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-18 15:33insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

Bioproject accession
INSDC accession
NCBI release date
2023-08-02
NCBI update date
2023-08-02

Alignment and QC metrics

Completeness
68.16%
Length
10302
Total ambiguous nucs
2
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
48
Total stop codons
0
Total unknown nucs
2783

Sample details

Earliest release date
2023-08-02
Collection subdivision level 1
Pottawattamie, Iowa
Collection country
USA
Collection date
2017-08-21
Collection date (lower bound)
2017-08-21
Collection date (upper bound)
2017-08-21

Host

Host name scientific
Culex restuans
Host taxon id

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C435T
  • A630G
  • C1260T
  • T1442C
  • C1465T
  • G1575A
  • G1662A
  • C1750T
  • C2223T
  • C2304T
  • G2361A
  • C2466T
  • G2661A
  • A3049G
  • T3228C
  • C3328T
  • C3366T
  • T3528C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I194V

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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