This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KPNV.1

USA/LOC_000KPNV.1/2018-08-25
N. Grubaugh, N. Matteson, K. Gangavarupa, A. Salamone, E. Dykstra, E. Knutson, A. Duffy & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-08-25
Earliest release date
2023-08-02
Sampling location
USA (Spokane, Washington)
Isolate name
WNV/mosquito/Spokane-WA-USA/2018-08-25/W0830

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-06 10:58insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721344.1
Submitting group
Date submitted
2026-06-06 10:58:20 UTC
Date released
2026-06-06 11:18:06 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
79
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:R41K
  • NS4A:V85T
  • NS4B:A149V
  • NS4B:I240M
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T123A
  • env:T126I
  • env:I159A
  • env:I474T
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C600T
  • A630G
  • C660T
  • G792A
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • C1974T
  • T2029C
  • T2103C
  • T2387C
  • C2448T
  • C2466T
  • G2661A
  • C2955T
  • A3114G
  • T3228C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS4A

  • NS4A:R41K
  • NS4A:A85T

NS4B

  • NS4B:A149V
  • NS4B:I240M

NS5

  • NS5:K314R

env

  • env:T123A
  • env:V159A
  • env:L167F
  • env:I474T
Deletions
N/A
Insertions
N/A

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