This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KN7T.1

Display Name: USA/LOC_000KN7T.1/2005-08-03
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Neitzel & K. Andersen

Sample details

Collection date
2005-08-03
Collection date (lower bound)
2005-08-03
Collection date (upper bound)
2005-08-03
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Mower, Minnesota

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-17 15:05insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Alignment and QC metrics

Length
10302
Total SNPs
29
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
184
Total frame shifts
0
Completeness
91.74%
Total stop codons
0

Submission details

Submission ID
OQ721310.1
Submitting group
Date submitted
2025-11-17 15:05:09 UTC
Date released
2025-11-17 15:22:56 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T642C
  • C687T
  • G1080A
  • T1442C
  • C1465T
  • C2466T
  • T3792C
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • A5835G
  • C6138T
  • T6165C
  • T6405C
  • C6426T
  • C6996T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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