This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KLEF.1

Display Name: LOC_000KLEF.1/2004-08-13
Duggal, N. K.; Reisen, W. K.; Fang, Y.; Newman, R. M.; Yang, X.; Ebel, G. D.; Brault, A. C.; Brault, A.

Submission details

Submission ID
KR349023.1
Submitting group
Date submitted
2025-06-06 17:34:28 UTC
Date released
2025-06-06 17:37:35 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-06-06 17:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases

Alignment and QC metrics

Completeness
91.12%
Length
10135
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
46
Total stop codons
0
Total unknown nucs
85

Sample details

Earliest release date
2015-08-08
Collection date
2004-08-13
Collection date (lower bound)
2004-08-13
Collection date (upper bound)
2004-08-13
Isolate name
SAYO_829_2004

Host

Host name scientific
Culex tarsalis
Host taxon id

INSDC

INSDC accession
NCBI release date
2015-08-08
NCBI update date
2015-08-08

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • C745T
  • T1442C
  • C1465T
  • C2319T
  • C2466T
  • G2709A
  • A2799T
  • T2943C
  • C3570T
  • C3969T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • G4698A
  • C4803T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:V9M

    • NS1

  • NS1:K110N

    • NS5

  • NS5:K314R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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