This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KLEF.1

USA/LOC_000KLEF.1/2018-09-02
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-09-02
Earliest release date
2023-08-02
Sampling location
USA (EBR, Louisiana)
Isolate name
WNV/mosquito/EBR-LA-USA/2018-09-02/W1330

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-16 20:49insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721238.1
Submitting group
Date submitted
2026-03-16 20:49:08 UTC
Date released
2026-03-16 21:03:48 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
87
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:I26V
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:P431Q
  • NS5:A860T
  • env:K93R
  • env:T126I
  • env:I159A
  • env:Q391H
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • C882T
  • G951A
  • A981T
  • T1150C
  • C1281T
  • C1377T
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1830C
  • G1854A
  • C1917T
  • T2073C
  • C2109T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I26V

NS4B

  • NS4B:I240M

NS5

  • NS5:P431Q
  • NS5:A860T

env

  • env:V159A
  • env:L167F
  • env:Q391H
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue