This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KKJ7.1

Display Name: USA/LOC_000KKJ7.1/2018-08-14
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

Sample details

Collection date
2018-08-14
Collection date (lower bound)
2018-08-14
Collection date (upper bound)
2018-08-14
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
WBR, Louisiana
Isolate name
WNV/mosquito/WBR-LA-USA/2018-08-14/W1329

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-24 08:52insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex quinquefasciatus

Alignment and QC metrics

Length
10302
Total SNPs
93
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721197.1
Submitting group
Date submitted
2025-12-24 08:52:14 UTC
Date released
2025-12-24 09:08:06 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A108G
  • C340T
  • C435T
  • T615A
  • C624T
  • A630G
  • C745T
  • A1005G
  • T1083C
  • T1442C
  • C1465T
  • C1620T
  • G1662A
  • A1683G
  • C1750T
  • C2304T
  • C2440T
  • C2466T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R167K
  • NS2A:R188K

    • NS3

  • NS3:Y13H
  • NS3:F509L

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:I402T

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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