This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KJ6Z.1

USA/LOC_000KJ6Z.1/2008-07-06
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2008-07-06
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/bird/Sacramento-CA-USA/2008-07-06/W0812

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721173.1
Submitting group
Date submitted
2026-07-10 15:19:17 UTC
Date released
2026-07-10 15:39:54 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
59
Total unknown nucs
5
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:R288C
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C474T
  • A630G
  • C660T
  • T1442C
  • C1465T
  • T1656C
  • T2421C
  • C2466T
  • T2868C
  • T3138C
  • T3318C
  • G3471A
  • C3570T
  • G3708T
  • T3792C
  • T3897C
  • C4107T
  • A4146G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS5

  • NS5:R288C

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue