This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KJ6Z.1

USA/LOC_000KJ6Z.1/2005-08-02
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Neitzel & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2005-08-02
Earliest release date
2023-08-02
Sampling location
USA (Washington, Minnesota)
Isolate name
WNV/bird/Washington-MN-USA/2005-08-02/W1484

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-13 13:22insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721162.1
Submitting group
Date submitted
2026-05-13 13:22:01 UTC
Date released
2026-05-13 13:57:13 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
45
Total unknown nucs
27
Length
10302 (93.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:Y35H
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:I402V
  • env:I33V
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C120T
  • C474T
  • A630G
  • C660T
  • T666C
  • A1063G
  • C1227T
  • C1317T
  • T1442C
  • C1465T
  • A2193T
  • C2466T
  • T2572C
  • T2619C
  • C2991T
  • C3249T
  • T3633C
  • C3655T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:Y35H

NS4B

  • NS4B:I240M

NS5

  • NS5:I402V

env

  • env:I33V
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue