This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KBN7.1

Brazil/Ar848804/2017-03-01
J. P. N. Neto, L. A. M. Reis, M. N. O. Freitas, B. L. S. do Nascimento, L. L. das Chagas, H. H. M. da Costa, J. C. P. Rodrigues, C. M. Braga, E. V. P. da Silva, S. P. Silva & L. C. Martins

Evandro Chagas Institute, Department of Arbovirology and Hemorrhagic Fevers

Sample details

Collection date
2017-03
Earliest release date
2023-05-08
Sampling location
Brazil
Isolate name
Ar848804

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-04 16:50insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-05-08
NCBI update date
2023-05-08
INSDC accession

Host

Host

Submission details

Submission ID
OP422646.1
Submitting group
Date submitted
2026-06-04 16:50:25 UTC
Date released
2026-06-04 17:10:40 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
131
Total inserted nucs
32
Length
11050 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:V9M
  • 2K:L15M
  • NS2A:H119Y
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:I597T
  • NS4A:M42V
  • NS4A:V85A
  • NS4B:I245V
  • NS5:K177R
  • NS5:E390G
  • NS5:I722V
  • env:M46I
  • env:K93R
  • env:T126I
  • env:I159V
  • prM:A16V
  • prM:T20A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G2A
  • T3C
  • T6C
  • G96A
  • C512T
  • A523G
  • A630G
  • G813A
  • C849T
  • C987T
  • G1104A
  • C1275T
  • C1308T
  • A1362G
  • C1465T
  • C1467T
  • T1536C
  • C1557T
Deletions
N/A
Insertions

ins_0:TTTCTTAGACATTGAGATCTTCGTGCTAAGA, ins_10:A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:V9M

NS2A

  • NS2A:H119Y

NS3

  • NS3:I597T

NS4A

  • NS4A:M42V

NS4B

  • NS4B:I245V

NS5

  • NS5:E390G
  • NS5:I722V

env

  • env:M46I
  • env:L167F

prM

  • prM:A16V
  • prM:T20A
Deletions
N/A
Insertions
N/A

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