This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KBN7.1

Display Name: Spain/LOC_000KBN7.1/2020-09
P. Aguilera-Sepulveda, S. Napp, F. Llorente, C. Solano-Manrique, R. Molina-Lopez, E. Obon, A. Sole, M. A. Jimenez-Clavero, J. Fernandez-Pinero & N. Busquets

Sample details

Collection date
2020-09
Collection date (lower bound)
2020-09-01
Collection date (upper bound)
2020-09-30
Earliest release date
2022-04-06
Collection country
Spain
Collection subdivision level 1
Tarragona, Catalonia
Isolate name
Spain/2020/Northern_goshawk/AC924

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-01 16:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Instituto Nacional de Investigacion y Tecnologia Agraria y Alimentaria (INIA), Centro de Investigacion en Sanidad Animal (CISA)

INSDC

NCBI release date
2022-04-06
NCBI update date
2022-04-06
INSDC accession

Host

Host taxon id
Host name scientific
Accipiter gentilis

Alignment and QC metrics

Length
10973
Total SNPs
2218
Total inserted nucs
43
Total deleted nucs
22
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
NS4B:31-33(nt:7006-7014)
Completeness
99.30%
Total stop codons
0

Submission details

Submission ID
OM037673.1
Submitting group
Date submitted
2025-12-01 16:19:43 UTC
Date released
2025-12-01 16:33:21 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C52T
  • C123T
  • G126A
  • G128A
  • A156T
  • T167G
  • G168A
  • T180A
  • T199C
  • C204T
  • C210T
  • C216A
  • G222C
  • A231T
  • T234C
  • C246T
  • C255T
  • G261A
    • Deletions
    6994-6996, 10421, 10441-10444, 10467-10470, 10487-10494, 10904, 10921
    Insertions
    ins_7005:GTTGA, ins_7014:G, ins_10408:TGTATTGAGT, ins_10417:GTTGTAGTGTTTA, ins_10427:G, ins_10449:GGGC, ins_10452:AGA, ins_10457:TT, ins_10483:GTT, ins_10501:T

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:M15L

    • NS1

  • NS1:S9G
  • NS1:Y34F
  • NS1:Y35H
  • NS1:K44R
  • NS1:K51A
  • NS1:V71I
  • NS1:E94N
  • NS1:S99A
  • NS1:T105A
  • NS1:I113M
  • NS1:L123F
  • NS1:V135I
  • NS1:K141E
  • NS1:Q146A
  • NS1:L153M
  • NS1:K170R
  • NS1:V171I
  • NS1:S174T

    • NS2A

  • NS2A:M34I
  • NS2A:L38M
  • NS2A:I39L
  • NS2A:S68A
  • NS2A:M90L
  • NS2A:N104S
  • NS2A:V112A
  • NS2A:H119Y
  • NS2A:R122K
  • NS2A:Q123N
  • NS2A:I124V
  • NS2A:L126S
  • NS2A:I129V
  • NS2A:A137S
  • NS2A:T147S
  • NS2A:T150N
  • NS2A:R167K
  • NS2A:I183V

    • NS2B

  • NS2B:A41V
  • NS2B:S61T
  • NS2B:M88I
  • NS2B:V103A
  • NS2B:V120I

    • NS3

  • NS3:K11R
  • NS3:Q92H
  • NS3:F130Y
  • NS3:D172E
  • NS3:I175A
  • NS3:R203K
  • NS3:R215K
  • NS3:A233S
  • NS3:P249H
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:L336M
  • NS3:S347T
  • NS3:T356V
  • NS3:V384I
  • NS3:T436E

    • NS4A

  • NS4A:I6V
  • NS4A:K11R
  • NS4A:T64S
  • NS4A:M65L
  • NS4A:A85V
  • NS4A:V86I
  • NS4A:V89A

    • NS4B

  • NS4B:F17L
  • NS4B:Q19H
  • NS4B:R20K
  • NS4B:I21P
  • NS4B:T116A
  • NS4B:I168V
  • NS4B:L183M
  • NS4B:K193R
  • NS4B:I202T

    • NS5

  • NS5:Q18H
  • NS5:I33T
  • NS5:K45R
  • NS5:V49I
  • NS5:I78V
  • NS5:R101K
  • NS5:C139A
  • NS5:C140S
  • NS5:I162V
  • NS5:R177K
  • NS5:V181I
  • NS5:K190R
  • NS5:L197T
  • NS5:R224H
  • NS5:V229I
  • NS5:R247K
  • NS5:Y254F
  • NS5:T276I

    • capsid

  • capsid:S11N
  • capsid:V24G
  • capsid:S100T
  • capsid:K108T
  • capsid:T109A
  • capsid:I111F
  • capsid:A112T
  • capsid:V113I
  • capsid:M114L
  • capsid:I115L
  • capsid:S120C
  • capsid:V121A

    • env

  • env:E55D
  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159T
  • env:L167F
  • env:A172S
  • env:N199S
  • env:T205S
  • env:T208A
  • env:T210S
  • env:V232T

    • prM

  • prM:A29V
  • prM:M44L
  • prM:D46E
  • prM:S57A
  • prM:A73S
  • prM:M112L
  • prM:V156A
  • prM:V157I
    • Deletions
    NS4B:28-30
    Insertions
    ins_NS4B:22:TRETTLG

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