This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KBN7.1

Display Name: USA/LOC_000KBN7.1/2002
R. M. Newman, M. C. Zody, H. Ip, T. W. Poon, P. Charlebois, B. Weiner, X. Yang, M. E. Piper, M. Fitzgerald, C. McCowan, S. Young, S. Gargeya, J. Levin, C. Malboeuf, J. Qu, A. Ireland, S. B. Chapman, C. Murphy, J. Wortman, C. Nusbaum & B. Birren

Sample details

Collection date
2002
Collection date (lower bound)
2002-01-01
Collection date (upper bound)
2002-12-31
Earliest release date
2014-06-30
Collection country
USA
Isolate name
WNV-1/US/BID-V6643/2002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-13 08:43insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Broad Institute of MIT & Harvard

INSDC

NCBI release date
2014-06-30
NCBI update date
2014-06-30
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Cyanocitta cristata

Alignment and QC metrics

Length
11028
Total SNPs
34
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
1
Total frame shifts
0
Completeness
99.98%
Total stop codons
0

Submission details

Submission ID
KJ501388.1
Submitting group
Date submitted
2025-10-13 08:42:45 UTC
Date released
2025-10-13 08:55:06 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • G1029T
  • T1442C
  • C1457T
  • C1465T
  • C2466T
  • C3570T
  • C4107T
  • A4146G
  • C4272T
  • C4803T
  • C4827T
  • A5184G
  • G5280A
  • G5436A
  • C6138T
  • A6204G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:A547T

    • env

  • env:V159A
  • env:A164V
  • env:L167F
    • Deletions
    None
    Insertions
    None

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