This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HEER.1

USA/LOC_000HEER.1/2002-09-04
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2002-09-04
Earliest release date
2016-08-02
Sampling location
USA (Queens Co., NY)
Isolate name
WNV-1/Passer domesticus/USA/02003630/2002

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547261.1
Submitting group
Date submitted
2026-08-12 11:45:10 UTC
Date released
2026-08-12 12:01:37 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
19
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:Q146R
  • NS2A:A224T
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
  • env:L178Q
  • env:V497A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C93T
  • A630G
  • C1465T
  • T1499A
  • C1974T
  • T2456C
  • A2906G
  • C3903T
  • C4107T
  • G4195A
  • A4257G
  • T5190C
  • G5280A
  • T6405C
  • G7797A
  • T8235C
  • A8958G
  • C10338T
  • C10408T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:Q146R

NS2A

  • NS2A:A224T

env

  • env:L167F
  • env:L178Q
  • env:V497A
Deletions
N/A
Insertions
N/A

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