This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HE75.1

USA/LOC_000HE75.1/2013-07-17
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2013-07-17
Earliest release date
2016-08-02
Sampling location
USA (Suffolk Co., NY)
Isolate name
WNV-1/Culex/USA/13510557/2013

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-10 12:19insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547254.1
Submitting group
Date submitted
2026-06-10 12:19:02 UTC
Date released
2026-06-10 12:35:38 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
76
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS4B:T111A
  • NS5:I78V
  • NS5:K177R
  • capsid:V121A
  • env:K93R
  • env:T126I
  • env:I159A
  • env:S226N
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T458C
  • A630G
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • G1643A
  • T1965C
  • A2097C
  • C2109T
  • C2371T
  • C2466T
  • C2593T
  • T3138C
  • C3504T
  • C3680T
  • C3699T
  • C3808T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I
  • NS4B:T111A

NS5

  • NS5:I78V

capsid

  • capsid:V121A

env

  • env:V159A
  • env:L167F
  • env:S226N
Deletions
N/A
Insertions
N/A

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