This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HE59.1

Display Name: USA/LOC_000HE59.1/2002-09-13
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

Sample details

Collection date
2002-09-13
Collection date (lower bound)
2002-09-13
Collection date (upper bound)
2002-09-13
Earliest release date
2016-08-02
Collection country
USA
Collection subdivision level 1
Onondaga Co., NY

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
J. Craig Venter Institute

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culiseta

Alignment and QC metrics

Length
10787
Total SNPs
39
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
97.81%
Total stop codons
0

Submission details

Submission ID
KX547252.1
Submitting group
Date submitted
2025-11-10 18:59:55 UTC
Date released
2025-11-10 19:11:03 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T861C
  • C1465T
  • T2190C
  • T2832C
  • C3018T
  • C3208T
  • C4107T
  • A4146G
  • T4182C
  • T4413C
  • T4564C
  • C5253T
  • G5280A
  • A5661G
  • C5940T
  • A5964G
  • C6138T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:M15L

    • NS4B

  • NS4B:A83S
  • NS4B:L96F
  • NS4B:G104E

    • NS5

  • NS5:K314R

    • env

  • env:L167F
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue