This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HE59.1

USA/LOC_000HE59.1/2002-09-13
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2002-09-13
Earliest release date
2016-08-02
Sampling location
USA (Onondaga Co., NY)
Isolate name
WNV-1/Culiseta sp./USA/36020219/2002

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:21insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547252.1
Submitting group
Date submitted
2026-05-20 16:21:42 UTC
Date released
2026-05-20 16:40:29 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
39
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:A83S
  • NS4B:L96F
  • NS4B:G104E
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T126I
  • env:I159V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T861C
  • C1465T
  • T2190C
  • T2832C
  • C3018T
  • C3208T
  • C4107T
  • A4146G
  • T4182C
  • T4413C
  • T4564C
  • C5253T
  • G5280A
  • A5661G
  • C5940T
  • A5964G
  • C6138T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:M15L

NS4B

  • NS4B:A83S
  • NS4B:L96F
  • NS4B:G104E

NS5

  • NS5:K314R

env

  • env:L167F
Deletions
N/A
Insertions
N/A

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